View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_low_5 (Length: 492)
Name: NF13217_low_5
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 72 - 482
Target Start/End: Complemental strand, 27657692 - 27657271
Alignment:
| Q |
72 |
tagatactagaaatctctattatagatattattcaaattatcataaatgctg-----------tccgttgcttttctcaccattgccatctatagctagt |
160 |
Q |
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| T |
27657692 |
tagaaactagaaatctctattatagatattattcaaattatcataaatgttgaatatgaaatgtgtgttgcttttctcaccattgccatctatagctagt |
27657593 |
T |
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| Q |
161 |
aaaaattgataggtatccaggactcaaggtagtaggtctaagcttagtggtaaatgtctctattagagctacaatgcaatatacaagagctatcctctgc |
260 |
Q |
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| T |
27657592 |
aaaaatggataggtatccaggactcaaggttgtaggtctaagcttagtggtaaatgtctctattagagctacaatgcaatatacaagagctatcctctgc |
27657493 |
T |
|
| Q |
261 |
attgaaacacaatacacaaaataagagttatatattcaagaattgaattattgagaattttaacatggtgctttaattaggcttgtatagattaattcaa |
360 |
Q |
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| T |
27657492 |
attgaaacacaatacacaaaataagagttatatattcaagaattgaattattgagaattttaacatggtgctttaattaggcttgtatagattaattcaa |
27657393 |
T |
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| Q |
361 |
ttacatatataaatacctgaagaatgccacaccatctgataaatttcatgtcaactccatatgagagatcatcaggggcatgtgaatatccacctgcagc |
460 |
Q |
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| T |
27657392 |
ttacatatataaatacctgaagaatgccacaccatctgataaatttcatgtcaactccatatgagagatcatcaggggcatgtgaatatccacctgcagt |
27657293 |
T |
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| Q |
461 |
ttgtcagtacagtataatatac |
482 |
Q |
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| T |
27657292 |
ttgtcagtacagtcaaatatac |
27657271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 27657765 - 27657717
Alignment:
| Q |
21 |
acaaaccctccaagcctatatatgtaacacatacaaattaatgtgcaat |
69 |
Q |
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| T |
27657765 |
acaaaccctccaagcctatatatgtaacacatacaaattaatgtgcaat |
27657717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 135 - 261
Target Start/End: Original strand, 41309404 - 41309530
Alignment:
| Q |
135 |
tctcaccattgccatctatagctagtaaaaattgataggtatccaggactcaaggtagtaggtctaagcttagtggtaaatgtctctattagagctacaa |
234 |
Q |
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||||||||||||||| ||||| ||| ||||| | || | ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
41309404 |
tctcaccattgccatttataggcagtgaaaatggctatgcgtccgggactcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaa |
41309503 |
T |
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| Q |
235 |
tgcaatatacaagagctatcctctgca |
261 |
Q |
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| T |
41309504 |
tacaatatacaagggctattctctgca |
41309530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 135 - 261
Target Start/End: Original strand, 41324011 - 41324137
Alignment:
| Q |
135 |
tctcaccattgccatctatagctagtaaaaattgataggtatccaggactcaaggtagtaggtctaagcttagtggtaaatgtctctattagagctacaa |
234 |
Q |
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| T |
41324011 |
tctcaccattgccatttataggcagtgaaaatggctatgcgtccaggcctcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaa |
41324110 |
T |
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| Q |
235 |
tgcaatatacaagagctatcctctgca |
261 |
Q |
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| T |
41324111 |
tacaatatactagtgctattctctgca |
41324137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 41309612 - 41309692
Alignment:
| Q |
375 |
acctgaagaatgccacaccatctgataaatttcatgtcaactccatatgagagatcatcaggggcatgtgaatatccacct |
455 |
Q |
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| T |
41309612 |
acctggagaatgccacaccatctgataaatttcatgttaactccatatacgagttcatcaggggcatgagagtatccacct |
41309692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 41324234 - 41324287
Alignment:
| Q |
374 |
tacctgaagaatgccacaccatctgataaatttcatgtcaactccatatgagag |
427 |
Q |
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|||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
41324234 |
tacctgtagaatgccacaccatctaataaatttcatgtcgactccatatgagag |
41324287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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