View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13217_low_6 (Length: 449)

Name: NF13217_low_6
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13217_low_6
NF13217_low_6
[»] chr1 (2 HSPs)
chr1 (1-431)||(7098152-7098579)
chr1 (17-431)||(7582683-7583094)
[»] chr5 (12 HSPs)
chr5 (293-424)||(17981687-17981818)
chr5 (38-411)||(30202907-30203277)
chr5 (18-209)||(17981876-17982065)
chr5 (17-179)||(30243327-30243489)
chr5 (17-247)||(30434743-30434970)
chr5 (38-141)||(30714410-30714513)
chr5 (17-179)||(30339480-30339642)
chr5 (38-179)||(30482390-30482531)
chr5 (303-411)||(30205267-30205375)
chr5 (38-193)||(4380630-4380785)
chr5 (148-207)||(30205468-30205527)
chr5 (17-195)||(29871156-29871334)
[»] chr4 (2 HSPs)
chr4 (371-424)||(13615605-13615658)
chr4 (305-416)||(20297846-20297957)
[»] chr7 (1 HSPs)
chr7 (221-340)||(26706160-26706279)


Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 7098579 - 7098152
Alignment:
Q  1 cttgttacgttggatgccaaacttagagggactgtttaaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaat 100  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||     
T  7098579 cttgttacgcgggatgccaaacttagagggactgttgaaagtggaaagagatgagacgtttccttgtctttctattttggaaatcgacaattgccctaaa 7098480  T
Q  101 cttgaacttccgtgtcttccatctgttagagacctctatgtagatgaatgtaataataagatgctgaagtcaatctctagcttttatggtcttaccaccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098479 cttgaacttccgtgtcttccatctgttagagacctctatgtagatgaatgtaataataagatgctgaagtcaatctctagcttttatggtcttaccaccc 7098380  T
Q  201 ttaccctttttcatagaggtgaaggaataacatccttcccaaaggagttttttcggaactttacttctcttcaaactctaagtgtagggaatttccaaaa 300  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098379 ttacccttt---atagaggtgaaggaataacatccttcccaaaggagttttttcggaactttacttctcttcaaactctaagtgtagggaatttccaaaa 7098283  T
Q  301 tttgaaggagttaccaaatgaacgcttcaacctagctttggagcatccgcaaatctcttgttgctgtgagcttgagtatttaccagagaaaatatgggga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098282 tttgaaggagttaccaaatgaacgcttcaacctagctttggagcatctgcaaatctcttgttgctgtgagcttgagtatttaccagagaaaatatgggga 7098183  T
Q  401 ggtctgcaatcacttcaatctatgaggattt 431  Q
    |||||||||||||||||||||||||||||||    
T  7098182 ggtctgcaatcacttcaatctatgaggattt 7098152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 7582683 - 7583094
Alignment:
Q  17 ccaaacttagagggactgtttaaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtc 116  Q
    ||||||||||||||  |||| |||||||||| | | |||| || ||||||||||||||||||| | ||| | ||||||||||| ||||||||||||||||    
T  7582683 ccaaacttagaggggttgttgaaagtggaaaaaaaggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtc 7582782  T
Q  117 ttccatctgttagagacctctatgtagatgaatgtaataataagatgctgaagtcaatctctagcttttatggtcttaccacccttaccctttttcatag 216  Q
    |||||||||||| ||||||    |||    |||||| |||| || |||||||||||||||||||||| ||| |||||||||||||||| |||    || |    
T  7582783 ttccatctgttaaagacctgagagtacggaaatgtactaatgagttgctgaagtcaatctctagcttgtattgtcttaccacccttacacttg---atgg 7582879  T
Q  217 aggtgaaggaataacatccttcccaaaggagttttttcggaactttacttctcttcaaactctaagtgtagggaatttccaaaatttgaaggagttacca 316  Q
    ||| ||||||||||||||||||||||||||| | ||| | ||| |||||| ||| ||| |||||| | ||  |  || || |||||||||||||||||||    
T  7582880 aggcgaaggaataacatccttcccaaaggagatgtttggaaaccttacttgtctccaatctctaactctactgggttaccgaaatttgaaggagttacca 7582979  T
Q  317 aatgaacgcttcaacctagctttggagcatccgcaaatctcttgttgctgtgagcttgagtatttaccagagaaaatatggggaggtctgcaatcacttc 416  Q
    ||||||| ||||||||||| ||||||||||| | | ||| ||| ||||  ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  7582980 aatgaacccttcaacctagttttggagcatctgaatatcgctttttgcgatgagcttgagtatttaccagagaaaatatggggaggtttgcaatcactac 7583079  T
Q  417 aatctatgaggattt 431  Q
    |||| ||||||||||    
T  7583080 aatccatgaggattt 7583094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 293 - 424
Target Start/End: Complemental strand, 17981818 - 17981687
Alignment:
Q  293 ttccaaaatttgaaggagttaccaaatgaacgcttcaacctagctttggagcatccgcaaatctcttgttgctgtgagcttgagtatttaccagagaaaa 392  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| | | |||  ||  ||| | |||||||||||||||||||||||||    
T  17981818 ttccacaatttaaaggagttaccaaatgaacccttcaacctagctttgaagcatctggatatcaatttgtgcagcgagcttgagtatttaccagagaaaa 17981719  T
Q  393 tatggggaggtctgcaatcacttcaatctatg 424  Q
    ||||||||||||||||||||||||||||||||    
T  17981718 tatggggaggtctgcaatcacttcaatctatg 17981687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 411
Target Start/End: Complemental strand, 30203277 - 30202907
Alignment:
Q  38 aaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtcttccatctgttagagacctct 137  Q
    |||||||||||||| |||| || ||||||||||| |   ||||| ||||    || |||||| ||| ||||  | |||||||||| ||||| | |||| |    
T  30203277 aaagtggaaagagaggagatgtttccttgtctttttcaattggatatcgccttttaccctaaacttcaactgtcatgtcttccatatgttaaaaaccttt 30203178  T
Q  138 atgtagatgaatgtaataataagatgctgaagtcaatctctagcttttatggtcttaccacccttaccctttttcatagaggtgaaggaataacatcctt 237  Q
    ||||| |||||||||| ||| || | |||| ||| ||||||||||| |||||||||||  |||||  ||||    | ||| ||||||||||||| |||||    
T  30203177 atgtaaatgaatgtaacaatgagttactgaggtcgatctctagcttctatggtcttacttcccttgaccttg---agagaagtgaaggaataacctcctt 30203081  T
Q  238 cccaaaggagttttttcggaactttacttctcttcaaactctaagtgtagggaatttccaaaatttgaaggagttaccaaatgaacgcttcaacctagct 337  Q
    |||||||| | | ||| | ||| |||||| |||| ||  | | || ||| |   ||||| ||| ||||| |||||||||||||||| |||||  ||||||    
T  30203080 cccaaaggggatgtttagaaaccttacttgtcttgaatatttgagagtaagtggtttccgaaaattgaaagagttaccaaatgaacccttcagtctagct 30202981  T
Q  338 ttggagcatccgcaaatctcttgttgctgtgagcttgagtatttaccagagaaaatatggggaggtctgcaatc 411  Q
    ||||||||||   | |||||||||||| | |||||||||  |||||||||| |||| ||||||||||| |||||    
T  30202980 ttggagcatctaaatatctcttgttgcagcgagcttgagcctttaccagaggaaatttggggaggtctacaatc 30202907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 17982065 - 17981876
Alignment:
Q  18 caaacttagagggactgtttaaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtct 117  Q
    ||||||||||||| ||||| |||||||||||||  ||||  | ||||||||||||||||||| | |||  ||||||   ||| |||||||||||||| ||    
T  17982065 caaacttagagggtctgttgaaagtggaaagag--gagaaatgtccttgtctttctattttgaacatccgaaattgtgataaacttgaacttccgtgcct 17981968  T
Q  118 tccatctgttagagacctctatgtagatgaatgtaataataagatgctgaagtcaatctctagcttttatggtcttaccacccttacccttt 209  Q
    ||||||||||| |||| || |  ||  || ||| | | || || | |||||||||||||||||| | ||| |||||| ||||||||||||||    
T  17981967 tccatctgttaaagacttccaactaattggatgcagtgatcagttactgaagtcaatctctagcatgtatagtcttaacacccttacccttt 17981876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 30243327 - 30243489
Alignment:
Q  17 ccaaacttagagggactgtttaaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtc 116  Q
    |||||| |||||||  | || |||||||||||||  |||| || |||||||||||||| |||||| |||   || |||||||| |||| ||| || ||||    
T  30243327 ccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgtc 30243426  T
Q  117 ttccatctgttagagacctctatgtagatgaatgtaataataagatgctgaagtcaatctcta 179  Q
    |||||||| ||| |||||||| ||||   |||||||| ||| || | |||| |||||||||||    
T  30243427 ttccatctcttaaagacctctttgtatgggaatgtaacaatgagttactgaggtcaatctcta 30243489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 30434970 - 30434743
Alignment:
Q  17 ccaaacttagagggactgtttaaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtc 116  Q
    |||||| |||||||  | || |||||||||||||  |||| || |||||||||||||| |||||| |||   || |||||||| |||| ||| || ||||    
T  30434970 ccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgtc 30434871  T
Q  117 ttccatctgttagagacctctatgtagatgaatgtaataataagatgctgaagtcaatctctagcttttatggtcttaccacccttaccctttttcatag 216  Q
    |||||||| ||| |||||||  ||| |||| | |||| ||| || | |||| ||||||||||| |||   |||||||||    |||||||   |  ||||    
T  30434870 ttccatctcttaaagacctcggtgtcgatggacgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccc---taaatag 30434774  T
Q  217 aggtgaaggaataacatccttcccaaaggag 247  Q
     |||||||||||||||||||| ||| |||||    
T  30434773 tggtgaaggaataacatccttaccagaggag 30434743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 30714410 - 30714513
Alignment:
Q  38 aaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtcttccatctgttagagacctct 137  Q
    |||||||||||||  |||| || ||||| ||||||||  |||| ||||||   ||||||||| |||| ||| || |||||||||||| ||| ||||||||    
T  30714410 aaagtggaaagaggggagatgtttccttctctttctaaattggtaatcgattgttgccctaaacttggactgccatgtcttccatctcttaaagacctct 30714509  T
Q  138 atgt 141  Q
    ||||    
T  30714510 atgt 30714513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 30339480 - 30339642
Alignment:
Q  17 ccaaacttagagggactgtttaaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtc 116  Q
    |||||| |||||||  | || |||||||||||||  |||| || ||||||||||||||  |||  ||||    ||||||||||  ||| ||| || ||||    
T  30339480 ccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccatgtc 30339579  T
Q  117 ttccatctgttagagacctctatgtagatgaatgtaataataagatgctgaagtcaatctcta 179  Q
    |||||||| ||| |||||||||||| || | |||||| ||| || | |||| |||||||||||    
T  30339580 ttccatctcttaaagacctctatgttgagggatgtaacaatgagttactgaggtcaatctcta 30339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 179
Target Start/End: Complemental strand, 30482531 - 30482390
Alignment:
Q  38 aaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtcttccatctgttagagacctct 137  Q
    |||||||||||||  |||| || |||||||||||||   |||||||||  | |||||| ||| |||| ||| || | |||||||||| ||  || |||||    
T  30482531 aaagtggaaagaggggagatgtttccttgtctttcttacttggaaatctcatattgccataaacttggactgccatctcttccatctcttgaaggcctct 30482432  T
Q  138 atgtagatgaatgtaataataagatgctgaagtcaatctcta 179  Q
    |||| |||| |||||| ||| || | |||| |||||||||||    
T  30482431 atgtggatggatgtaacaatgagttactgaggtcaatctcta 30482390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 411
Target Start/End: Complemental strand, 30205375 - 30205267
Alignment:
Q  303 tgaaggagttaccaaatgaacgcttcaacctagctttggagcatccgcaaatctcttgttgctgtgagcttgagtatttaccagagaaaatatggggagg 402  Q
    |||||||||||||||||||||  || | ||||| | ||||||||| |  ||||||||  ||   ||||||||||| ||||||| || |||| |||| |||    
T  30205375 tgaaggagttaccaaatgaaccatttagcctagttatggagcatctgataatctcttcatgtgatgagcttgagtctttaccaaaggaaatttgggaagg 30205276  T
Q  403 tctgcaatc 411  Q
    |||||||||    
T  30205275 tctgcaatc 30205267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 4380785 - 4380630
Alignment:
Q  38 aaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtcttccatctgttagagacctct 137  Q
    |||||||||||||  |||  || ||||||||||||||  ||||| ||| | ||||||||||| |||| ||| || |||| ||||||| ||| | |||||     
T  4380785 aaagtggaaagaggggagttgtttccttgtctttctaacttggatatctagaattgccctaaacttggactgccatgtcatccatctcttaaacacctcg 4380686  T
Q  138 atgtagatgaatgtaataataagatgctgaagtcaatctctagcttttatggtctt 193  Q
     ||| || | |||||| ||| || | |||| ||||||||||| ||||  |||||||    
T  4380685 ttgttgagggatgtaacaatgagttactgaggtcaatctctacctttcgtggtctt 4380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 30205527 - 30205468
Alignment:
Q  148 atgtaataataagatgctgaagtcaatctctagcttttatggtcttaccacccttaccct 207  Q
    |||||| ||| || |||||| ||||||||||||||||| |||||||| || |||||||||    
T  30205527 atgtaacaatgagttgctgaggtcaatctctagcttttgtggtcttaacagccttaccct 30205468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 29871334 - 29871156
Alignment:
Q  17 ccaaacttagagggactgtttaaagtggaaagagatgagacgtctccttgtctttctattttggaaatcgaaaattgccctaatcttgaacttccgtgtc 116  Q
    |||||| |||||||  | || ||||| |||||||  |||| || |||||||||||||| |||||| ||    || ||||||||  ||| ||| || ||||    
T  29871334 ccaaacatagagggtttattgaaagttgaaagaggggagatgtttccttgtctttctagtttggatatttggaaatgccctaaaattggactgccatgtc 29871235  T
Q  117 ttccatctgttagagacctctatgtagatgaatgtaataataagatgctgaagtcaatctctagcttttatggtcttac 195  Q
    |||||||| ||| |||||||  ||  |||  |||||| ||| || | |||| ||||||||||| ||||| |||||||||    
T  29871234 ttccatctcttaaagacctcgttgccgatccatgtaacaatgagttactgaggtcaatctctaccttttgtggtcttac 29871156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 13615658 - 13615605
Alignment:
Q  371 cttgagtatttaccagagaaaatatggggaggtctgcaatcacttcaatctatg 424  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  13615658 cttgagtatttaccagagaaattatggggaggtcggcaatcacttcaatctatg 13615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 416
Target Start/End: Original strand, 20297846 - 20297957
Alignment:
Q  305 aaggagttaccaaatgaacgcttcaacctagctttggagcatccgcaaatctcttgttgctgtgagcttgagtatttaccagagaaaatatggggaggtc 404  Q
    ||||||||||||||||||| ||| |||| ||||||| | |||| | | |||||| ||||  ||||| | ||||  ||||||||| |||| |||| |||||    
T  20297846 aaggagttaccaaatgaaccctttaacccagctttgaaacatctggatatctctcgttgtcgtgagttggagtccttaccagagcaaatttgggaaggtc 20297945  T
Q  405 tgcaatcacttc 416  Q
    | ||||| ||||    
T  20297946 ttcaatcccttc 20297957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 26706279 - 26706160
Alignment:
Q  221 gaaggaataacatccttcccaaaggagttttttcggaactttacttctcttcaaactctaagtgtagggaatttccaaaatttgaaggagttaccaaatg 320  Q
    ||||||||||||||||||||| ||| | | ||    ||| |||||||||||||| ||||   |||||  ||||||| |||| ||||||||||||||||||    
T  26706279 gaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctgtttgtagataatttcccaaatctgaaggagttaccaaatg 26706180  T
Q  321 aacgcttcaacctagctttg 340  Q
    ||| ||| |||| |||||||    
T  26706179 aaccctttaacccagctttg 26706160  T

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