View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13217_low_7 (Length: 418)

Name: NF13217_low_7
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13217_low_7
NF13217_low_7
[»] chr3 (17 HSPs)
chr3 (112-413)||(925583-925884)
chr3 (112-413)||(44702968-44703269)
chr3 (112-278)||(24758985-24759151)
chr3 (112-278)||(24826863-24827029)
chr3 (113-247)||(33648375-33648509)
chr3 (112-278)||(37984709-37984875)
chr3 (112-278)||(53024890-53025056)
chr3 (156-264)||(13364198-13364306)
chr3 (154-238)||(21037162-21037246)
chr3 (156-307)||(46921626-46921775)
chr3 (112-283)||(18986333-18986504)
chr3 (112-278)||(17689293-17689459)
chr3 (112-278)||(31687494-31687660)
chr3 (138-247)||(20370786-20370895)
chr3 (138-202)||(46590842-46590906)
chr3 (154-238)||(46832494-46832578)
chr3 (159-247)||(36155457-36155545)
[»] chr5 (6 HSPs)
chr5 (112-413)||(43026461-43026762)
chr5 (112-278)||(30442893-30443059)
chr5 (156-278)||(22003049-22003171)
chr5 (138-244)||(37714174-37714280)
chr5 (156-223)||(7472560-7472627)
chr5 (158-219)||(9463572-9463633)
[»] chr4 (4 HSPs)
chr4 (112-413)||(5454071-5454372)
chr4 (18-99)||(5453290-5453371)
chr4 (160-264)||(30176365-30176469)
chr4 (123-184)||(27707845-27707906)
[»] scaffold0007 (1 HSPs)
scaffold0007 (156-308)||(79276-79428)
[»] chr7 (12 HSPs)
chr7 (112-278)||(14231836-14232002)
chr7 (120-242)||(11002996-11003118)
chr7 (112-278)||(26906764-26906930)
chr7 (154-245)||(44117826-44117917)
chr7 (112-278)||(1264560-1264726)
chr7 (169-267)||(21314400-21314498)
chr7 (113-278)||(48847212-48847377)
chr7 (123-247)||(34577192-34577316)
chr7 (148-247)||(22368168-22368267)
chr7 (112-190)||(30068107-30068185)
chr7 (169-247)||(40674471-40674549)
chr7 (112-190)||(45137779-45137857)
[»] chr6 (10 HSPs)
chr6 (112-220)||(22390029-22390137)
chr6 (112-220)||(30775426-30775534)
chr6 (189-279)||(26533381-26533471)
chr6 (176-298)||(9853274-9853395)
chr6 (112-278)||(31891479-31891645)
chr6 (156-307)||(32263099-32263251)
chr6 (138-244)||(4439956-4440062)
chr6 (123-184)||(2736627-2736688)
chr6 (138-202)||(4095981-4096045)
chr6 (113-224)||(21999415-21999526)
[»] chr1 (3 HSPs)
chr1 (112-278)||(25226606-25226773)
chr1 (159-247)||(47742018-47742106)
chr1 (159-208)||(38685384-38685433)
[»] chr8 (5 HSPs)
chr8 (112-298)||(18850850-18851031)
chr8 (156-307)||(35615191-35615341)
chr8 (114-296)||(43382483-43382665)
chr8 (156-247)||(16804720-16804811)
chr8 (156-277)||(31378870-31378991)
[»] chr2 (1 HSPs)
chr2 (156-223)||(12742644-12742711)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 112 - 413
Target Start/End: Original strand, 925583 - 925884
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  925583 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcaatcactcaaacaggttggcat 925682  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 311  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  925683 ttaccttccacaaccagtattctatcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgaaaac 925782  T
Q  312 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatctc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  925783 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatttc 925882  T
Q  412 ag 413  Q
    ||    
T  925883 ag 925884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 112 - 413
Target Start/End: Complemental strand, 44703269 - 44702968
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44703269 gaattccttttaaatttcaacgtcgacaattccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgacat 44703170  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||  ||    
T  44703169 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaatggctgaatattttgctgttggatgaacac 44703070  T
Q  312 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatctc 411  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||| |||||| |||||| ||    
T  44703069 ggttgctgcattgataataccaataatgttgttttcaaggagatttttcgtaacggttagttaatttcactctgtttatttatttgttctatttcatttc 44702970  T
Q  412 ag 413  Q
    ||    
T  44702969 ag 44702968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 24759151 - 24758985
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||||||| | ||||| | ||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||    
T  24759151 gaattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacat 24759052  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||| | || ||||| ||||| ||||| || || || |||||| | ||||||||||||    
T  24759051 ctatcttccacaatcggtcttctcacatggacaactatatgttgcaatatcacgtgttacatcaagg 24758985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 24826863 - 24827029
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||||||| | ||||| | ||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||    
T  24826863 gaattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacat 24826962  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||| | || ||||| ||||| ||||| || || || |||||| | ||||||||||||    
T  24826963 ctatcttccacaatcggtcttctcacatggacaactatatgttgcaatatcacgtgttacatcaagg 24827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 247
Target Start/End: Complemental strand, 33648509 - 33648375
Alignment:
Q  113 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 212  Q
    ||||||||| |||||||||||| ||||||| ||||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||     
T  33648509 aattcctttcaaatttcaacgtagtcagtttcctatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacatc 33648410  T
Q  213 taccttccacaaccagtattctctcatggtcaact 247  Q
    || ||||||||| | || ||||| ||||| |||||    
T  33648409 tatcttccacaatcggtcttctcacatggacaact 33648375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 37984709 - 37984875
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || ||||||||    
T  37984709 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcat 37984808  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||| | ||  |||| ||||| || || || || || |||||| | ||||||||||||    
T  37984809 ctatcttccacaatcggtcgtctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 37984875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 53025056 - 53024890
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||||||  | || || ||||||||| | |||||| ||||||| || |||||||||||||| || ||||| || || |||| |||    
T  53025056 gaattcctttcaaatttcaacgcagacaatttcctatatctttgtgttttacaatgactataaacaaaagtcagggacaatcacttaagcaagttgacat 53024957  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  53024956 ctatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcacgtgttacatcaagg 53024890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 13364306 - 13364198
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 255  Q
    |||||||||||||  || ||||||||||| ||||||||||| ||||| |||| ||| || |||||| |  || | ||||| |||||||||||||| ||||    
T  13364306 tgttttgcaatgattattaacaaaagtcaagggcagtcactaaaacaagttgacatatatcttccaaaggcaattttctcgcatggtcaactctatgtag 13364207  T
Q  256 ccatatcaa 264  Q
    | |||||||    
T  13364206 caatatcaa 13364198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 21037246 - 21037162
Alignment:
Q  154 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctca 238  Q
    ||||||||||||||||||| ||||||| |||||| || ||| | ||||| |||||||| ||||| |||||| | |||||||||||    
T  21037246 tttgttttgcaatgaccattaacaaaactcagggtcaatcattaaaacaagttggcatctacctaccacaatctgtattctctca 21037162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 307
Target Start/End: Complemental strand, 46921775 - 46921626
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 255  Q
    ||||||||||||||||||||| ||||| | ||||||||||| || ||| |||| || ||||||| |||    || ||||   |||||||||| || ||||    
T  46921775 tgttttgcaatgaccatcaactaaagttaagggcagtcactaaatcagattggtatataccttctaca--ttgtgttcttaaatggtcaactttatgtag 46921678  T
Q  256 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 307  Q
    | |||||||||||| | ||||| || ||  ||||||||||||| ||||||||    
T  46921677 caatatcaagggttgcctcaagaaatggtttgaaaattttgctattagatga 46921626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 283
Target Start/End: Complemental strand, 18986504 - 18986333
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    ||||||| ||||| ||||| ||||| ||||||||||||||  |||  ||||||||||| |||||||||||||| ||||| ||| | ||| | |||||  |    
T  18986504 gaattccatttaagtttcagcgtcgacagttccctatatcggtttcatttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagt 18986405  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagg 283  Q
     |||||||| ||||| || || || || || ||||| || || ||  | ||||| ||||||||||| |||||    
T  18986404 ataccttcctcaaccggttttttcccacggacaactatatgttgcggtgtcaagagttacatcaagaaaagg 18986333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 17689293 - 17689459
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||| ||| |||||||||||  | |||||  ||||| || | ||||||||||||||||| |||||||||||||| || ||||| || || ||||| ||    
T  17689293 gaattcgtttcaaatttcaacgcagacagtttactatagctttgtgttttgcaatgaccataaacaaaagtcagggacaatcacttaagcaagttgggat 17689392  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||| | || ||||| ||||| || || || || || ||||||   ||||||||||||    
T  17689393 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacatgttacatcaagg 17689459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 31687494 - 31687660
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||||||  | |||||  ||||| || | ||||||||||| || || |||||||||||||| |  ||||| || || |||| |||    
T  31687494 gaattcctttcaaatttcaacgcagacagttttctatagctttgtgttttgcaatcactataaacaaaagtcagggacgatcacttaagcaagttgacat 31687593  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||| |||| ||||| ||||| || || || || || |||||| | ||||||||||||    
T  31687594 ctatcttccacaatcagtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 31687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 20370895 - 20370786
Alignment:
Q  138 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 237  Q
    ||||| ||||||||| |||||||||||||||| |||||||| ||||| || || ||| | ||| | ||||   | |||||||| ||||| || |||||||    
T  20370895 cagtttcctatatctgtttgttttgcaatgacaatcaacaagagtcaaggacaatcattgaaagaagttgctgtctaccttcctcaacccgtgttctctc 20370796  T
Q  238 atggtcaact 247  Q
    ||||||||||    
T  20370795 atggtcaact 20370786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 46590906 - 46590842
Alignment:
Q  138 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaaca 202  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || |||||||||||    
T  46590906 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaaca 46590842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 46832578 - 46832494
Alignment:
Q  154 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctca 238  Q
    |||||||||| |||||||| |||||| ||||  | || ||||| |||||||||||||| ||||| |||||| || | ||||||||    
T  46832578 tttgttttgctatgaccattaacaaacgtcaatgtcaatcactaaaacaggttggcatctacctaccacaatcaatcttctctca 46832494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 36155457 - 36155545
Alignment:
Q  159 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 247  Q
    ||||||||||| || ||||||||||| || ||||| ||||| || |||||  | || || ||||||||  | |||||||||||||||||    
T  36155457 tttgcaatgactattaacaaaagtcaaggtcagtctctcaagcaagttggtgtatatctcccacaacctatgttctctcatggtcaact 36155545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 112 - 413
Target Start/End: Complemental strand, 43026762 - 43026461
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  43026762 gaattccttttaaatttcaacgtcgacagttccctatatttgtttgttttgcaatgaacattaacaaaagtcaggggcagtcactcaagcaggttggcat 43026663  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 311  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  43026662 ttacattctacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgaacac 43026563  T
Q  312 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatctc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||| ||    
T  43026562 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaacgtttagttaatttcactctgtttatttatctgttatgtttcatttc 43026463  T
Q  412 ag 413  Q
    ||    
T  43026462 ag 43026461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 30443059 - 30442893
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||||||    ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| ||  | ||||||||    
T  30443059 gaattcctttcaaatttcaacgcatacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagtaagttggcat 30442960  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  30442959 ctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 30442893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 22003171 - 22003049
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 255  Q
    |||||||||||||| || ||||||||||| || || ||||| || || |||||||| || ||||||||| | || ||||| ||||| || || || || |    
T  22003171 tgttttgcaatgactataaacaaaagtcaaggacaatcacttaagcaagttggcatctatcttccacaatcggtcttctcacatggacagctatatgttg 22003072  T
Q  256 ccatatcaagggttacatcaagg 278  Q
    | |||||| | ||||||||||||    
T  22003071 caatatcacgcgttacatcaagg 22003049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 37714280 - 37714174
Alignment:
Q  138 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 237  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||    
T  37714280 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcatggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctc 37714181  T
Q  238 atggtca 244  Q
    |||||||    
T  37714180 atggtca 37714174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 7472627 - 7472560
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccaca 223  Q
    |||||||||||||| || |||||||||||||| || ||||| || || |||||||| || ||||||||    
T  7472627 tgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcatctatcttccaca 7472560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 9463572 - 9463633
Alignment:
Q  158 ttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttc 219  Q
    ||||||||||||||| ||||||||||| | ||||||||| ||| | |||| ||| |||||||    
T  9463572 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttgacatataccttc 9463633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 112 - 413
Target Start/End: Original strand, 5454071 - 5454372
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454071 gaattccttttaaatttcaacgccgacagttccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 5454170  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 311  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||| |||||  ||    
T  5454171 ttaccttccacaaccagtattctctcatggtcaactctatgtagccatatcaagggttacatcaaggaaaggacttaaaattttgttgttggatgaacac 5454270  T
Q  312 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatctc 411  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| ||    
T  5454271 ggttgctgcattgatagtaccaataatgttgttttcaacgagatttttcgtaacgtttagttaatttcactctgtttatttatctgttctgtttcatttc 5454370  T
Q  412 ag 413  Q
    ||    
T  5454371 ag 5454372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 5453290 - 5453371
Alignment:
Q  18 tatagctttacatttctttggttctattgtataactttgtcagcgttcttcttaaacagaatgggaagattcaggcatctgc 99  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||| || ||||||||||||||||||||    
T  5453290 tatagctttacatttatttggttcaattgtataactttgtcagcgtgtttcttaaacaaaaagggaagattcaggcatctgc 5453371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 30176469 - 30176365
Alignment:
Q  160 ttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccat 259  Q
    |||||||||| || |||||||||||  | || ||||||||||| |||||||| || ||| ||||| |||| ||||| ||||||||||| || || || ||    
T  30176469 ttgcaatgactattaacaaaagtcaaagacaatcactcaaacaagttggcatatatctttcacaatcagtgttctcgcatggtcaactgtatgttgcgat 30176370  T
Q  260 atcaa 264  Q
    |||||    
T  30176369 atcaa 30176365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 27707906 - 27707845
Alignment:
Q  123 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtca 184  Q
    ||||| |||||| | ||||| |||||||||| ||||||||||||||| ||||| || |||||    
T  27707906 aaattccaacgtaggcagtttcctatatctacttgttttgcaatgacaatcaataagagtca 27707845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 156 - 308
Target Start/End: Complemental strand, 79428 - 79276
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 255  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||| ||||  ||||||||||| || ||||    
T  79428 tgttttgcaatgactatgaacaaaagtcaagggcagtcactcaaacaagttgacatatatcttccacaaccagtgttcttgcatggtcaactttatgtag 79329  T
Q  256 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgat 308  Q
    | |||||| | ||||| |||||||| || |||||||||| |||  ||||||||    
T  79328 caatatcaggagttacttcaaggaatggtctgaaaatttcgctaatagatgat 79276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 14231836 - 14232002
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || ||||||||    
T  14231836 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcat 14231935  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  14231936 ctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 14232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 11003118 - 11002996
Alignment:
Q  120 tttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttc 219  Q
    ||||||||||||||| | ||||| ||| ||||  | |||||||||||||| |||||||| ||||| || || |||||||||||  ||||  | |||||||    
T  11003118 tttaaatttcaacgtaggcagtttcctctatcagtatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaaattggtgtgtaccttc 11003019  T
Q  220 cacaaccagtattctctcatggt 242  Q
    | ||||| |||||||||||||||    
T  11003018 ctcaacccgtattctctcatggt 11002996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 26906930 - 26906764
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || || ||||||||||| || ||||| || || ||| ||||    
T  26906930 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaataaaagtcagggacaatcacttaagcaagttagcat 26906831  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  26906830 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 26906764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 44117826 - 44117917
Alignment:
Q  154 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaa 245  Q
    ||||||||||||||||||| |||||||| || ||||| ||| | ||| | |||||||| ||||| |||||| | |||||||| || ||||||    
T  44117826 tttgttttgcaatgaccattaacaaaagccaagggcaatcattaaaataagttggcatctacctaccacaatctgtattctcccacggtcaa 44117917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 1264560 - 1264726
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||||||     |||| |||||| || | || ||||||||||| || |||||||||||||| || ||||| || || |||||| |    
T  1264560 gaattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggctt 1264659  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  1264660 ctatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcatgtgttacatcaagg 1264726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 21314498 - 21314400
Alignment:
Q  169 ccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaaggg 267  Q
    |||| |||||||||||   |||||||||  |||| ||||| || ||||||||||| ||| | ||||| ||||||||||| || ||||| ||||||||||    
T  21314498 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacagccaatgttctcacatggtcaactttatgtagcaatatcaaggg 21314400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 48847377 - 48847212
Alignment:
Q  113 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 212  Q
    ||||||||| |||||||||||     |||| |||||| || | || ||||||||||| || |||||||||||||| || ||||| || || |||||| |     
T  48847377 aattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcttc 48847278  T
Q  213 taccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
    || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  48847277 tatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcatgtgttacatcaagg 48847212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 34577192 - 34577316
Alignment:
Q  123 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccac 222  Q
    ||||| |||||| | ||||| ||||||||| ||| |||||||||||| |||||||| ||||| || || ||| | ||| | ||||   | |||||||| |    
T  34577192 aaattccaacgtaggcagtttcctatatctgtttattttgcaatgacaatcaacaagagtcaaggacaatcattaaaagaagttgatgtctaccttcctc 34577291  T
Q  223 aaccagtattctctcatggtcaact 247  Q
    |||  || |||||||||||||||||    
T  34577292 aactcgtgttctctcatggtcaact 34577316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 22368168 - 22368267
Alignment:
Q  148 tatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 247  Q
    ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||||||| ||||    
T  22368168 tatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctcatggtaaact 22368267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 30068107 - 30068185
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggca 190  Q
    ||||||| || || ||||| ||||| ||||||||||||||  | |  ||||||||||| |||||||||||||| |||||    
T  30068107 gaattccattcaagtttcagcgtcgacagttccctatatcggtgtcatttgcaatgacgatcaacaaaagtcaagggca 30068185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 40674549 - 40674471
Alignment:
Q  169 ccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 247  Q
    |||| |||||||||||   |||||||||  |||| ||||| || ||||||||||||||| | ||||| |||||||||||    
T  40674549 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacaaccaatgttctcacatggtcaact 40674471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 45137779 - 45137857
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggca 190  Q
    ||||||| || || ||||| ||||| ||||||||||||||  | |  ||||||||||| |||||||||||||| |||||    
T  45137779 gaattccattcaagtttcagcgtcgacagttccctatatcggtgtcatttgcaatgacgatcaacaaaagtcaagggca 45137857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 22390137 - 22390029
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    ||||| ||||||||||||||||||| |||||| |||||| | | | |||||| |||||||| || |||||||| || |||||||| ||| | ||||||||    
T  22390137 gaatttcttttaaatttcaacgtcgacagttcgctatatttgtatcttttgcgatgaccattaataaaagtcaaggacagtcactaaaataagttggcat 22390038  T
Q  212 ttaccttcc 220  Q
     ||||||||    
T  22390037 ataccttcc 22390029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 30775426 - 30775534
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||||||||| |||||  |  |||| ||||||  | ||||||||||||||| ||||||||||| ||| |||||||||||||| || ||||||||    
T  30775426 gaattccttttaaattccaacgctgagagtttcctatagatgtttgttttgcaatgatcatcaacaaaaatcaagggcagtcactcaagcaagttggcat 30775525  T
Q  212 ttaccttcc 220  Q
     || |||||    
T  30775526 atatcttcc 30775534  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 26533381 - 26533471
Alignment:
Q  189 cagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagga 279  Q
    |||||||||||||| |||||  | ||||||| |||||| |||||||||||||||||||  || || || ||||||||||||| ||||||||    
T  26533381 cagtcactcaaacaagttggtgtataccttctacaacccgtattctctcatggtcaacattatgttgcaatatcaagggttatatcaagga 26533471  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 9853274 - 9853395
Alignment:
Q  176 caaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatca 275  Q
    ||||||||| || |||||||||||| | |||||||| || ||||||||||| || ||||| ||||  ||||| || ||||| ||||| || ||||| |||    
T  9853274 caaaagtcaaggacagtcactcaaataagttggcatatatcttccacaacc-gtgttctcgcatgaacaactttatgtagcaatatcgagagttacttca 9853372  T
Q  276 aggaaagggctgaaaattttgct 298  Q
    ||| | || ||||||||||||||    
T  9853373 agggatggcctgaaaattttgct 9853395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 31891645 - 31891479
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    |||||||||| |||||||| ||    ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || | ||||||    
T  31891645 gaattcctttcaaatttcaccgcatacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaaggtggcat 31891546  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  31891545 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 31891479  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 307
Target Start/End: Original strand, 32263099 - 32263251
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctct-catggtcaactctacgta 254  Q
    ||||||| |||||| || ||||||| ||| |||||||||| |||||| || ||||| || || ||||||||||| || | | ||| ||||||| || |||    
T  32263099 tgttttgtaatgactattaacaaaaatcaagggcagtcacgcaaacaagtaggcatatatctcccacaaccagttttttttgcattgtcaactttatgta 32263198  T
Q  255 gccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 307  Q
    || |||||||| ||||| |||| ||  ||  |||||||||||||  |||||||    
T  32263199 gcaatatcaagagttacttcaatgagtggtttgaaaattttgctaatagatga 32263251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 4439956 - 4440062
Alignment:
Q  138 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 237  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||    
T  4439956 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctc 4440055  T
Q  238 atggtca 244  Q
    |||||||    
T  4440056 atggtca 4440062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 2736627 - 2736688
Alignment:
Q  123 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtca 184  Q
    ||||| |||||| | ||||| ||||||||| |||||||||||||||| |||||||| |||||    
T  2736627 aaattccaacgtaggcagtttcctatatctgtttgttttgcaatgacaatcaacaagagtca 2736688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 4095981 - 4096045
Alignment:
Q  138 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaaca 202  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || |||||||||||    
T  4095981 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaaca 4096045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 21999526 - 21999415
Alignment:
Q  113 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 212  Q
    ||||||||| |||||||||||  | || || |||||| || | |||||| ||||||| || |||||||||||||| || ||||| || || ||| ||||     
T  21999526 aattcctttcaaatttcaacgcagacaatttcctatagctttgtgttttacaatgactataaacaaaagtcagggacaatcacttaagcaagttagcatc 21999427  T
Q  213 taccttccacaa 224  Q
    || |||||||||    
T  21999426 tatcttccacaa 21999415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 25226606 - 25226773
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccat-caacaaaagtcaggggcagtcactcaaacaggttggca 210  Q
    |||||||||| |||||||||||| | ||||| |||||| || | |||||||||||||| ||  || ||||||||||| || ||||| || || |||||||    
T  25226606 gaattcctttcaaatttcaacgtagacagtttcctatagctttgtgttttgcaatgactataaaaaaaaagtcagggacaatcacttaagcaagttggca 25226705  T
Q  211 tttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 278  Q
    | || ||||||||||| || ||||| ||||| ||  | || || || |||||| | ||||||||||||    
T  25226706 tctatcttccacaaccggtcttctcacatgggcagttatatgttgcaatatcacgtgttacatcaagg 25226773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 47742018 - 47742106
Alignment:
Q  159 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 247  Q
    ||||||||||| || ||||||||||| || || || |||||||| |||||  | || ||  ||||||| ||||||||||||||||||||    
T  47742018 tttgcaatgactattaacaaaagtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtattctctcatggtcaact 47742106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 38685384 - 38685433
Alignment:
Q  159 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgg 208  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| |||||    
T  38685384 tttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 38685433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 298
Target Start/End: Complemental strand, 18851031 - 18850850
Alignment:
Q  112 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 211  Q
    ||||| |||||||||| ||| || | ||||| | ||||||| |  |||||||||||||||| ||||||||||| | | ||||||| ||||| ||||| ||    
T  18851031 gaatttcttttaaatt-caatgtagacagtttcatatatctgtgagttttgcaatgaccattaacaaaagtcaagcgtagtcactaaaacaagttggtat 18850933  T
Q  212 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgct 298  Q
     ||||    ||||||||| || || ||||||||||| || ||||| |||||||||| ||| | ||| || || ||||||| ||||||    
T  18850932 atacc----acaaccagtgttgtcacatggtcaactttatgtagcaatatcaagggctacctaaagaaacggtctgaaaactttgct 18850850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 307
Target Start/End: Original strand, 35615191 - 35615341
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 255  Q
    ||||||| |||||| || ||||||||||| || ||||||| |||||| || ||||| || || ||||||||||| || |  ||||||||||| || ||||    
T  35615191 tgttttgtaatgactattaacaaaagtcaaggacagtcacgcaaacaagtaggcatatatctcccacaaccagtttttttgcatggtcaactttatgtag 35615290  T
Q  256 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 307  Q
    | |||| ||| ||||| |||||||| || ||  ||||||||||  |||||||    
T  35615291 caatat-aagagttacttcaaggaatggtctagaaattttgctaatagatga 35615341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 296
Target Start/End: Original strand, 43382483 - 43382665
Alignment:
Q  114 attccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcattt 213  Q
    ||||| |||||||| |||||||| ||||| ||| ||||  | |||||| | ||||| |||||||| ||||| || || ||||||||| | |||||  | |    
T  43382483 attccgtttaaattccaacgtcggcagtttcctctatcagtctgtttttctatgacaatcaacaagagtcaaggacaatcactcaaaaaagttggtgtgt 43382582  T
Q  214 accttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttg 296  Q
    || | || ||||| ||||||||||| |||||| | || || || ||||| || |||||||||||||  || ||||| ||||||    
T  43382583 acgtacctcaacccgtattctctcacggtcaagtttatgttgcaatatccagagttacatcaaggagtggtctgaagattttg 43382665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 16804720 - 16804811
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 247  Q
    |||||||||||||| || ||||||||||| || || || |||||||| |||||  | || ||  ||||||| || |||||||||||||||||    
T  16804720 tgttttgcaatgactattaacaaaagtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtgttctctcatggtcaact 16804811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 31378870 - 31378991
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 255  Q
    |||||||||||||| ||||||||||| || || || |||||||| || || ||  |||| ||||||||||| || ||||| || ||||| || || || |    
T  31378870 tgttttgcaatgacaatcaacaaaagccaaggacaatcactcaagcaagtcggtgtttatcttccacaacccgtcttctcacacggtcagctttatgttg 31378969  T
Q  256 ccatatcaagggttacatcaag 277  Q
    |  |||| || |||||||||||    
T  31378970 cagtatccagagttacatcaag 31378991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 12742644 - 12742711
Alignment:
Q  156 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccaca 223  Q
    |||||||||||||| || |||||||||||||| || ||||| || || |||||||| || ||||||||    
T  12742644 tgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcatctatcttccaca 12742711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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