View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_low_9 (Length: 411)
Name: NF13217_low_9
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 44856595 - 44856981
Alignment:
| Q |
18 |
aaaatgtcttgtccctttgctcaaaacttcatcccaagtcaacccatgtatcatgttgaatgaagcaaaacttgattcacacctttccatagggttcaat |
117 |
Q |
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| T |
44856595 |
aaaatgtcttgtccctttgctcaaaacttcatcccaagtcaacccatgtatcatgttgaatgaagcaaaacttgattcacacctttccatagggttcaat |
44856694 |
T |
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| Q |
118 |
atcctattacaagcattcttttgaaaccctattgactcaaaatcctcaaaaaatgtcttgttcaaaagtgcttccaagtaaaaaagcaaacttcttggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856695 |
atcctattacaagcattcttttgaaaccctattgactcaaaatcctcaaaaaatgtcttgttcaaaagtgcttccaagtaaaaaagcaaacttcttggat |
44856794 |
T |
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| Q |
218 |
tctttgaaaaagatatttttatatcataaggttgtaaaagtaaagaaactttttcatacactttgcttcctgtgtgtctaagttgcattgttaatgaacg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856795 |
tctttgaaaaagatatttttatatcataaggttgtaaaagtaaagaaactttttcatacactttgcttcctgtgtgtctaagttgcattgttaatgaacg |
44856894 |
T |
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| Q |
318 |
acttagaagtctcactgaagatcttgcttcagaaacagccaccaagaaatgttgtacaacgttgtcattgtcttgaacatgatgatg |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856895 |
acttagaagtctcactgaagatcttgcttcagaaacagccaccaagaaatgttgtacaacgttgtcattgtcttgaacatgatgatg |
44856981 |
T |
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