View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13218_high_10 (Length: 473)
Name: NF13218_high_10
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 30043247 - 30042773
Alignment:
| Q |
1 |
cacgcaataccgagttatcgtttgaatgatgctaagcttgaatagtttcaagaacaatattatgttgtgtaacaagtttattgctagtaaaaatgccaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30043247 |
cacgcaataccgagttatcgtttgaatgatgctaagcttgaatagtttcaagaacaatattatgttgtgtaacaagtttattgctagtaaaaatgccaag |
30043148 |
T |
|
| Q |
101 |
tattgtaggtctagtaatgatgttcgtgtaaaataagttaatgtatattacttgtttatatatgttaacagccgacatttgagtctccattgaacataga |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30043147 |
tattgtacgtctagtaatgatgttcgtgtaaaataagttaatgtatattacttatttatatatgttaacagccgacatttgagtctccattgaacatgga |
30043048 |
T |
|
| Q |
201 |
ggtcattgaaatgaataatacacgcccatcacaggccttcatgatcaatgacttgaaccaaannnnnnnnngacattaaaaataataacagaaattgccg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
30043047 |
ggtcattgaaatgaataatacacgcccatcacaggccttcatgatcaatgatttgaaccaaattattttttgacattaagaataataacagaaattgccg |
30042948 |
T |
|
| Q |
301 |
tcgcttctagggttagcgccgccgccccctttgtgaaggatttttccgtcgttcgatgagaaatagtctcccc----------tgttgttgccttgttct |
390 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
30042947 |
tcgcttctagggttagcgccgccgctccctttgtgaaggattttgccgtcgttcgatgagaaatagtctcccctgaacgtgtttgttgttgcgttgttct |
30042848 |
T |
|
| Q |
391 |
atttccttcgatattatttcttttcc-------aagatgacgctgattcctttgccttctcgatcatgtcctttg |
458 |
Q |
| |
|
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30042847 |
atttccttcgatattactccttttccagagataaagatgacgctgattcctttgccttctcgatcatgtgctttg |
30042773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30067764 - 30067543
Alignment:
| Q |
1 |
cacgcaataccgagttatcgtttgaatgatgctaagcttgaatagtttcaagaacaatattatgttgtgtaacaagtttattgctagtaaaaatgccaag |
100 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||| | |||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
30067764 |
cacgcaataccaagttatcgtttggattatgctaagcataaatagtttcaagaacaatgttgtgttc---aacaagtttattgctagtaaaaatgccaag |
30067668 |
T |
|
| Q |
101 |
tattgtaggtctagtaatgatgttcgtgtaaaataagttaatgtatattac---ttgtttatatatgttaacagccgacatttgagtctccattgaacat |
197 |
Q |
| |
|
||| |||||| || ||||||||||||| ||||||||| ||||| ||||| | |||||||||||| |||| |||| |||||||||||||||||| | || |
|
|
| T |
30067667 |
tatagtaggtttaataatgatgttcgtataaaataagctaatggatattgcttgttgtttatatattttaatagccaacatttgagtctccattggatat |
30067568 |
T |
|
| Q |
198 |
agaggtcattgaaatgaataatacac |
223 |
Q |
| |
|
|| |||| |||||||||||||||| |
|
|
| T |
30067567 |
gga-gtcaaggaaatgaataatacac |
30067543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 29995964 - 29996070
Alignment:
| Q |
4 |
gcaataccgagttatcgtttgaatgatgctaagcttgaatagtttcaagaacaatattatgttgtgt--aacaagtttattgctagtaaaaatgccaagt |
101 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| | ||||||||| ||| |||||| |||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
29995964 |
gcaataccaagttatcgtttggatgatgctaaacatgaatagttctaagtacaatactatgttgtgttcaacaagttaattgctagtaaaaatgccaagt |
29996063 |
T |
|
| Q |
102 |
attgtag |
108 |
Q |
| |
|
|| |||| |
|
|
| T |
29996064 |
atggtag |
29996070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 30007754 - 30007996
Alignment:
| Q |
4 |
gcaataccgagttatcgtttgaatgatgctaagcttgaatagtttcaagaacaatattatgtt---gtgtaacaagtttat--tgctagtaaaaatgcca |
98 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| |||||| |||| |||||| || ||||||||| | | || |||| |||| | |
|
|
| T |
30007754 |
gcaataccgagttatcgtttggatgatgctaagcatgaatagttacaagaataatactatgttcttgttcaacaagtttctactagtaataaagatgcta |
30007853 |
T |
|
| Q |
99 |
agtattgtaggtctagtaatgatgttcgtgtaaaataagttaatgtatattacttgtt---tatatatgttaacagccgacatttgagtctccattga-a |
194 |
Q |
| |
|
||||| | ||||||| |||||||||| |||||| ||||| |||||| |||||||||| | |||| |||||||||||||||||| | |
|
|
| T |
30007854 |
agtatggcaggtctattaatgatgtt-------------ttaatgcatattgcttgttctttatatatgttcatagccaacatttgagtctccattggga |
30007940 |
T |
|
| Q |
195 |
catagaggtcattgaaatgaataatacacgcccatcacaggccttcatgatcaatg |
250 |
Q |
| |
|
||| ||||||| | |||||||||||||| || |||||| |||||||||||||||| |
|
|
| T |
30007941 |
catggaggtcaataaaatgaataatacaagcatatcacatgccttcatgatcaatg |
30007996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30001635 - 30001688
Alignment:
| Q |
1 |
cacgcaataccgagttatcgtttgaatgatgctaagcttgaatagtttcaagaa |
54 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
30001635 |
cacgcaataccaagttatcgtttggatgatgctaagcttgaatagttccaagaa |
30001688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University