View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_high_11 (Length: 461)
Name: NF13218_high_11
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 5 - 445
Target Start/End: Original strand, 30274529 - 30274967
Alignment:
| Q |
5 |
agtgagatgaagtaaaggatcagtggagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagat |
104 |
Q |
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| T |
30274529 |
agtgagaagaagtaaaggatcagtggagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagat |
30274628 |
T |
|
| Q |
105 |
aatggatgagaaattgagaagcatgttgttttcaaaactctctcatagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttc |
204 |
Q |
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| T |
30274629 |
aatggatgagaaattgagaagcatgttgttttcaaaactct--catagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttc |
30274726 |
T |
|
| Q |
205 |
atcagtttgtaagctaacatgctcttctgttgttgcatttatcttcttgctcttggaaacccaaataaacatacacaccatcacctctctcagtaattcc |
304 |
Q |
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| T |
30274727 |
atcagtttgtaagctaacatgctcttctgttgttgcatttatcttcttgctcttggaaacccaaataaacatacacaccatcacctctctcagtaattcc |
30274826 |
T |
|
| Q |
305 |
attaaccaattcacttcgaacacattttcttcttcaagtttttcaattttcctcagctctaaaaataaaacctacacatgacagagactagactttatac |
404 |
Q |
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| T |
30274827 |
attaaccaattcacttcgaacacattttcttcttcaagtttttcaattttcctcagctctaaaaataaaacctacacatgacagagactagactttatac |
30274926 |
T |
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| Q |
405 |
taaatataaaagcttacataagcatatatagatgcaaaatc |
445 |
Q |
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| T |
30274927 |
taaatataaaagcttacataagcatatatagatgcaaaatc |
30274967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 164 - 321
Target Start/End: Complemental strand, 46270591 - 46270434
Alignment:
| Q |
164 |
aataaacagaagggagggaagtggaaaacctgtttggcttcatcagtttgtaagctaacatgctcttctgttgttgcatttatcttcttgctcttggaaa |
263 |
Q |
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|||||||| |||| |||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||| ||| ||||||||| |
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| T |
46270591 |
aataaacacaaggtagggaaatcaaaaacctgtttggcctcatcagtttgtaagctcacatgctcttctgttattgcattgatctctttgttcttggaaa |
46270492 |
T |
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| Q |
264 |
cccaaataaacatacacaccatcacctctctcagtaattccattaaccaattcacttc |
321 |
Q |
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| T |
46270491 |
cccaaataaacttacacaccatcacctctcttagtaatcctttcaaccaattcacttc |
46270434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 445
Target Start/End: Complemental strand, 46270422 - 46270332
Alignment:
| Q |
355 |
cctcagctctaaaaataaaacctacacatgacagagactagactttatactaaatataaaagcttacataagcatatatagatgcaaaatc |
445 |
Q |
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|||||| |||| ||||||| ||| |||||| || |||||| |||| |||||||||| ||| ||| |||||||||| | ||||||||||| |
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| T |
46270422 |
cctcagttctagaaataaagcctgcacatggcatagactaaacttcatactaaataccaaatcttgcataagcatacttggatgcaaaatc |
46270332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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