View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_high_12 (Length: 449)
Name: NF13218_high_12
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 433
Target Start/End: Original strand, 51213346 - 51213771
Alignment:
| Q |
8 |
catcatcattgaaaaccagattaagaggttgatcacaaagtgattgagaggacatccttttgatcacaacttcaacttgctgaatttagatgataannnn |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213346 |
catcttcattgaaaaccagattaagaggttgatcacaaagtgattgagaggacatccttttgatcacaacttcaacttgctgaatttagatgataatttt |
51213445 |
T |
|
| Q |
108 |
nnnctcattcaattgagcagaaaccgagtaacagccttgaaactgagaatgcacctgaacatacaagtaggtgggtgtagatcctcttaatatttgggaa |
207 |
Q |
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| T |
51213446 |
tttctcattcaattgagcagaaaccgagtaacagccttgaaactgagaatgcacctgaacatacaagtaggtgggtgtagatcctcttaatatttgggaa |
51213545 |
T |
|
| Q |
208 |
aattggacgatgtggccacccaaagttgaacataatcccgaatctatgcttcagagaaagcaatatattagagcgaaatgagagatgattttctttaaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213546 |
aattggacgatgtggccacccaaagttgaacataatcccgaatctatgcttcagagaaagcaatatattagagcgaaatgagagatgattttctttaaat |
51213645 |
T |
|
| Q |
308 |
ttatacgttttcattgtcgagtgaactatggtaagagctctttctattagtaaaagcagagtaactgcaacttagtagttctgactgtctgtttttagaa |
407 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51213646 |
ttatacgttttcattgttgagtgaactatggtaagagctctttctattagtaaaagcagagtaactgcaacttagtaggactgactgtctgtttttagaa |
51213745 |
T |
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| Q |
408 |
tcagaatcaggctacaaccgaaaaat |
433 |
Q |
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|||||||||||||||||||||||||| |
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| T |
51213746 |
tcagaatcaggctacaaccgaaaaat |
51213771 |
T |
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