View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13218_high_13 (Length: 444)
Name: NF13218_high_13
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 22 - 432
Target Start/End: Complemental strand, 7802275 - 7801864
Alignment:
| Q |
22 |
ttggtgtgctatgtcctctnnnnnnntaattgatattagaatcgggggtttttgtttttaaggtattcatgtttgggtttgtgaatagggg-ttgctgtt |
120 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7802275 |
ttggtgtgttatgtcctctaaaaaaataattgacattagaatcgggggtttttgtttttaaggtattcatgtttgggtttgtgaatagggggttgctgtt |
7802176 |
T |
|
| Q |
121 |
tggtcatgttaatgaaacatgtggtcatgaattctcagttacccttgttgtattgtgcaaagaattgtatgcgactggcttctttgcctgttttcagaag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7802175 |
tggtcatgttaatgaaacatgtggtcatgaattctcagttacccttgttgtattgtgcaaagaattgtatgcgactggcttcttcgcctgttttcagaag |
7802076 |
T |
|
| Q |
221 |
acagcggttttttataagatctcttggaggtagcattgattatcataccaattgtagttctggaaaaatgcagtctgttgaggttgatgctcagagggtt |
320 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7802075 |
acagcggtttttgataagatctcttggaggtagcattgattatcataccaattgtagttctggaaaaatgcagtctgttgaggttgatgctgagagggtt |
7801976 |
T |
|
| Q |
321 |
attagagaaattactcctgtcctagatcgaagtagacataaaggccaggcaggtacacaattcttgcaaatccatatcttcaannnnnnncattaagtgg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
7801975 |
attagagaaattactcctgtcctagatcgaagcagacataaaggacaggcaggtacacaattcttgcaaatccatatcttcaatttttttcaataagtgg |
7801876 |
T |
|
| Q |
421 |
tgatgatgatgt |
432 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7801875 |
tgatgatgatgt |
7801864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University