View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_high_14 (Length: 439)
Name: NF13218_high_14
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 50389880 - 50389461
Alignment:
| Q |
13 |
gaagacaatgacggacataagtgtcctatccaaaagtcattcaatgtcatcaactcaaagatctcaagtctgaagtgatcgataacaaatatttgcataa |
112 |
Q |
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| T |
50389880 |
gaagacaatgacggacataagtgtcctatccaaaagtcattcaatgtcatcaactcaaagatctcaagtctgaagtgatcgataacaaatatttgcataa |
50389781 |
T |
|
| Q |
113 |
gtaataaaagaacaatttgatcatttaaaatgtaataagagtagttttttattagaaaaagaaaaggaaagcgttttcatttattatcctggtaaacttg |
212 |
Q |
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| T |
50389780 |
gtaataaaagaacaatttgatcatttaaaatgtaataagagtagttttttattagaaaaagaaaaggaaagcgttttcatttattatcctggtaaacttg |
50389681 |
T |
|
| Q |
213 |
agcatttcatctttaaaattgtataataacatttatacactaattgcctgacag-aaatatgatagaac-------nnnnnnnnnnnngaatgatgatag |
304 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||| || ||||||| |
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| T |
50389680 |
agcatttcatctttaaaaatgtataataacatttatacactaatttcctgacagaaaatatgatataacttttttatttttttatttttaaggatgatat |
50389581 |
T |
|
| Q |
305 |
aacttttgttagaagttcgtattatacacatgtgcannnnnnnnaaaagattttttgaaagaatgaaacatatgcatgtgtgtgtattgtaaatttgagt |
404 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389580 |
aacttttgttagaagttcgtattat--acatgtgcattttttttaaaagattttttgaaagaatgaaacatatgcatgtgtgtgtattgtaaatttgagt |
50389483 |
T |
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| Q |
405 |
tatgtgtatgagatgttcatga |
426 |
Q |
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|||||||||||||||||||||| |
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| T |
50389482 |
tatgtgtatgagatgttcatga |
50389461 |
T |
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