View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_high_16 (Length: 418)

Name: NF13218_high_16
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_high_16
NF13218_high_16
[»] chr1 (1 HSPs)
chr1 (340-399)||(12659011-12659070)
[»] chr4 (1 HSPs)
chr4 (226-319)||(12880472-12880565)
[»] chr5 (3 HSPs)
chr5 (340-392)||(8589050-8589102)
chr5 (340-387)||(8590014-8590061)
chr5 (343-399)||(19828509-19828565)
[»] chr7 (2 HSPs)
chr7 (368-397)||(9024986-9025015)
chr7 (363-399)||(30332563-30332599)


Alignment Details
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 12659070 - 12659011
Alignment:
Q  340 atccatgttcaacattgcctcgaaagtcttcatgcaaaagtgttgaaaaccacttcaaat 399  Q
    ||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||    
T  12659070 atccatgttcaacgtatcctcgaaggtcttcatgcaaaagtgttgaaaaccacttcaaat 12659011  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 319
Target Start/End: Complemental strand, 12880565 - 12880472
Alignment:
Q  226 gagcaacatgaggagtctcgctctcctctgccttttttcttggagtatgttttattattttcttaatatgtgttttgttatcatgggtaactaa 319  Q
    ||||| || |||||||||| ||||||||  ||||| ||||| |||||||||||||| | ||  |||||||| |||||||| |||| ||||||||    
T  12880565 gagcatcaagaggagtctctctctcctcaacctttgttcttagagtatgttttattttgtttataatatgtattttgttaccatgagtaactaa 12880472  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 8589050 - 8589102
Alignment:
Q  340 atccatgttcaacattgcctcgaaagtcttcatgcaaaagtgttgaaaaccac 392  Q
    ||||||||||||  | ||||| |||||||||||||||||||||||||||||||    
T  8589050 atccatgttcaatgtagcctccaaagtcttcatgcaaaagtgttgaaaaccac 8589102  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 8590061 - 8590014
Alignment:
Q  340 atccatgttcaacattgcctcgaaagtcttcatgcaaaagtgttgaaa 387  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||||    
T  8590061 atccatattcaacatagcctcgaagatcttcatgcaaaagtgttgaaa 8590014  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 19828565 - 19828509
Alignment:
Q  343 catgttcaacattgcctcgaaagtcttcatgcaaaagtgttgaaaaccacttcaaat 399  Q
    |||||||||| | || ||||| |||||||| |||||||||  |||||||||||||||    
T  19828565 catgttcaacgtagcatcgaaggtcttcattcaaaagtgtgaaaaaccacttcaaat 19828509  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 9025015 - 9024986
Alignment:
Q  368 ttcatgcaaaagtgttgaaaaccacttcaa 397  Q
    ||||||||||||||||||||||||||||||    
T  9025015 ttcatgcaaaagtgttgaaaaccacttcaa 9024986  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 30332563 - 30332599
Alignment:
Q  363 aagtcttcatgcaaaagtgttgaaaaccacttcaaat 399  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  30332563 aagtcttcatacaaaaatgttgaaaaccacttcaaat 30332599  T

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