View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_high_20 (Length: 367)

Name: NF13218_high_20
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_high_20
NF13218_high_20
[»] chr6 (2 HSPs)
chr6 (18-350)||(33840107-33840439)
chr6 (29-350)||(33844110-33844431)
[»] chr4 (14 HSPs)
chr4 (79-143)||(36668493-36668557)
chr4 (207-283)||(15527286-15527362)
chr4 (198-246)||(18364244-18364292)
chr4 (198-246)||(36598633-36598681)
chr4 (105-140)||(35968452-35968487)
chr4 (105-155)||(35974142-35974192)
chr4 (297-335)||(36637042-36637080)
chr4 (266-332)||(55967095-55967161)
chr4 (198-239)||(35974057-35974098)
chr4 (203-256)||(36656422-36656475)
chr4 (199-251)||(18359232-18359284)
chr4 (199-251)||(36603644-36603696)
chr4 (198-250)||(38863151-38863203)
chr4 (96-152)||(55966925-55966981)
[»] chr3 (3 HSPs)
chr3 (199-254)||(25601740-25601795)
chr3 (96-142)||(25601846-25601892)
chr3 (199-292)||(25596897-25596990)
[»] chr8 (1 HSPs)
chr8 (198-252)||(35335884-35335938)
[»] chr5 (2 HSPs)
chr5 (105-155)||(19658252-19658302)
chr5 (105-155)||(19675091-19675141)
[»] chr7 (1 HSPs)
chr7 (199-256)||(44501441-44501498)
[»] chr1 (1 HSPs)
chr1 (94-155)||(42602782-42602843)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 33840107 - 33840439
Alignment:
Q  18 atgggaacacgcgtaatttaaaattttttggagcagttcagactcgtaatcgctatcgcactcaaaatcaagaatgtgcaatgcagctgagttatcacga 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840107 atgggaacacgcgtaatttaaaattttttggaccagttcagactcgtaatcgctatcgcactcaaaatcaagaatgtgcaatgcagctgagttatcacga 33840206  T
Q  118 agagtcaaaatcttagacacgaatgtgaaaaattgcttttcttttccacggaataaggttgaggaatgcnnnnnnngttctggaatacgtttccaaagat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||    
T  33840207 agagtcaaaatcttagacacgaatgtgaaaaattgcttttcttttccacggaataaagttgaggaatgcaaaaaaagttctggaatacgtttccaaagat 33840306  T
Q  218 gtttccatctggtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840307 gtttccatctggtggacaaaatgcaagttcgaacagcgtattcgattctcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtct 33840406  T
Q  318 gtcttcactttcttcgttttcggagtgacttct 350  Q
    |||||||||||||||||||||||||||||||||    
T  33840407 gtcttcactttcttcgttttcggagtgacttct 33840439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 29 - 350
Target Start/End: Original strand, 33844110 - 33844431
Alignment:
Q  29 cgtaatttaaaattttttggagcagttcagactcgtaatcgctatcgcactcaaaatcaagaatgtgcaatgcagctgagttatcacgaagagtcaaaat 128  Q
    ||||||||||||||||| ||| |||||||||||||| |||  |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  33844110 cgtaatttaaaatttttgggaccagttcagactcgtgatcagtatcacactcaaaatcaagaatatgcagtgcagctgagttatcacgaagagtcaaaat 33844209  T
Q  129 cttagacacgaatgtgaaaaattgcttttcttttccacggaataaggttgaggaatgcnnnnnnngttctggaatacgtttccaaagatgtttccatctg 228  Q
    ||||||||||||||| ||||||| ||  || |    || |||||| ||||||||| ||       |||  |||||||||||||| |||||||||||||||    
T  33844210 cttagacacgaatgtcaaaaatttctcgtcctccaaacagaataaagttgaggaacgcaacaaaagtttaggaatacgtttccagagatgtttccatctg 33844309  T
Q  229 gtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtctgtcttcacttt 328  Q
    |||||||||||||||||| |||| |||| |||  || ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  33844310 gtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcagtcgggtaagtcacttagtctatcttcacttt 33844409  T
Q  329 cttcgttttcggagtgacttct 350  Q
    |||||||||| ||| |||||||    
T  33844410 cttcgttttcagagcgacttct 33844431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 36668493 - 36668557
Alignment:
Q  79 tcaaaatcaagaatgtgcaatgcagctgagttatcacgaagagtcaaaatcttagacacgaatgt 143  Q
    |||| |||||||| | ||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  36668493 tcaacatcaagaacgcgcaatgcagttgagctatcacgaagagtcaaaatcttagacacaaatgt 36668557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 15527286 - 15527362
Alignment:
Q  207 tttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgt 283  Q
    |||||||| ||| | ||||||  |||||| |||||||||||||||||||| ||   | |||||||||||||||||||    
T  15527286 tttccaaatatgctcccatcttttggacagaatgcaagttcgaacagcgtctttagtgctcaaaaatgacaaaatgt 15527362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 18364292 - 18364244
Alignment:
Q  198 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagtt 246  Q
    |||||| ||||||||||||||||||||||| || ||||||||| |||||    
T  18364292 tggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtt 18364244  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 36598633 - 36598681
Alignment:
Q  198 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagtt 246  Q
    |||||| ||||||||||||||||||||||| || ||||||||| |||||    
T  36598633 tggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtt 36598681  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 35968487 - 35968452
Alignment:
Q  105 tgagttatcacgaagagtcaaaatcttagacacgaa 140  Q
    |||| |||||||||||||||||||||||||||||||    
T  35968487 tgaggtatcacgaagagtcaaaatcttagacacgaa 35968452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 35974192 - 35974142
Alignment:
Q  105 tgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattgctt 155  Q
    |||| ||||||||||||||||||||||| |||||||| ||  |||||||||    
T  35974192 tgaggtatcacgaagagtcaaaatcttatacacgaatatggcaaattgctt 35974142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 36637042 - 36637080
Alignment:
Q  297 gtcgggtaagtcacttagtctgtcttcactttcttcgtt 335  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  36637042 gtcgggtaagtcactcagcctgtcttcactttcttcgtt 36637080  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 55967095 - 55967161
Alignment:
Q  266 tcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtctgtcttcactttcttc 332  Q
    |||||||||| ||||||| ||  ||||  | ||||||||||||||||  ||||||||||||||||||    
T  55967095 tcaaaaatgataaaatgtgaaggagaacactgtcgggtaagtcactttatctgtcttcactttcttc 55967161  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 35974098 - 35974057
Alignment:
Q  198 tggaatacgtttccaaagatgtttccatctggtggacaaaat 239  Q
    ||||||||||||||| |||||| ||||||| |||||||||||    
T  35974098 tggaatacgtttccagagatgtctccatcttgtggacaaaat 35974057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 36656422 - 36656475
Alignment:
Q  203 tacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 256  Q
    |||||||||| ||||||||||||||  ||||||| | ||||||||| |||||||    
T  36656422 tacgtttccagagatgtttccatctcttggacaacacgcaagttcggacagcgt 36656475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 18359284 - 18359232
Alignment:
Q  199 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaac 251  Q
    |||||| ||||||||||||| ||||| ||  |||||||||||| |||||||||    
T  18359284 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaac 18359232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 36603644 - 36603696
Alignment:
Q  199 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaac 251  Q
    |||||| ||||||||||||| ||||| ||  |||||||||||| |||||||||    
T  36603644 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaac 36603696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 38863151 - 38863203
Alignment:
Q  198 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaa 250  Q
    ||||||||||||| | ||||||||||||||  |||||||||  ||||||||||    
T  38863151 tggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaa 38863203  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 55966925 - 55966981
Alignment:
Q  96 caatgcagctgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattg 152  Q
    ||||| || ||||||||||||||||||| |||||||||| ||| || ||| ||||||    
T  55966925 caatgtagttgagttatcacgaagagtcgaaatcttagatacggatatgacaaattg 55966981  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 25601795 - 25601740
Alignment:
Q  199 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagc 254  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||||||    
T  25601795 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagc 25601740  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 25601892 - 25601846
Alignment:
Q  96 caatgcagctgagttatcacgaagagtcaaaatcttagacacgaatg 142  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  25601892 caatgaagctgagctatcacgaagagtcaaaatcttagagacgaatg 25601846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 25596990 - 25596897
Alignment:
Q  199 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgtaaacaagaa 292  Q
    |||||| ||||||||||||  |||||||| || ||||||||||||||| |||| || || |   |  |||||||||||||||||| || |||||    
T  25596990 ggaatatgtttccaaagattcttccatctcgtagacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaa 25596897  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 35335938 - 35335884
Alignment:
Q  198 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaaca 252  Q
    ||||||||||||||| ||||||||||||||  ||||||||| ||||||| |||||    
T  35335938 tggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaaca 35335884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 19658252 - 19658302
Alignment:
Q  105 tgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattgctt 155  Q
    |||| |||||||||||||||||||||||| ||||||| || ||||||||||    
T  19658252 tgaggtatcacgaagagtcaaaatcttaggcacgaatttggaaaattgctt 19658302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 19675091 - 19675141
Alignment:
Q  105 tgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattgctt 155  Q
    |||| |||||||||||||||||||||||| ||||||| |  ||||||||||    
T  19675091 tgaggtatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgctt 19675141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 44501441 - 44501498
Alignment:
Q  199 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 256  Q
    |||| ||||||||||||||  |||||||||| |||||||||||||||  |||||||||    
T  44501441 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgt 44501498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 42602782 - 42602843
Alignment:
Q  94 tgcaatgcagctgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattgctt 155  Q
    |||| ||||| |||| |||||||||||||||||||||||||||| ||| || |||| |||||    
T  42602782 tgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaatatggaaaaatgctt 42602843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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