View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_high_22 (Length: 339)

Name: NF13218_high_22
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_high_22
NF13218_high_22
[»] chr2 (1 HSPs)
chr2 (39-339)||(7801589-7801900)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 39 - 339
Target Start/End: Original strand, 7801589 - 7801900
Alignment:
Q  39 aaacttgctacggttggcatatttgcaataatcaatgaactttttagatagaaaattccaaatacagaaacttgctatggttgcacatcgcaatcgt--a 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |    
T  7801589 aaacttgctacggttggcatatttgcaataatcaacgaactttttagatagaaaattcc-aatacagaaacttgctatggttgcacatcgcaatcgttga 7801687  T
Q  137 tattacggaaaatcacagtcaattgcacccttaatcatggttgcattgtggtttcaccaacat----------nnnnnnnnnnntctgcagcccagattg 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||                      |||||||||||||||    
T  7801688 tattacggaaaatcacagtcaattgcgcccttaatcatggttgcattgaggtttcaccaacataaaaaaaaaaaaaaaaaaaaaactgcagcccagattg 7801787  T
Q  227 aggttgcattgtgattataattaacaccatagctactatgaaaaggctagcacacatggaatgacagaaagaaggcacatcatcatcaccacttaatgat 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  7801788 aggttgcattgtgattataattaacaccatagctactatgaaaaggctagcacacatggaatgacagaaagaaggcacatcatcatcaccacttattgaa 7801887  T
Q  327 aaaaattgaagat 339  Q
    |||||||||||||    
T  7801888 aaaaattgaagat 7801900  T

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