View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_high_26 (Length: 299)

Name: NF13218_high_26
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_high_26
NF13218_high_26
[»] chr2 (2 HSPs)
chr2 (10-282)||(4485197-4485470)
chr2 (10-256)||(4489364-4489613)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 4485197 - 4485470
Alignment:
Q  10 attattcttagacacctttaagaaagatacccaaaagggcatggacttttaatgtttttctcagcaaa-tattagatatactaaccaattttgatggcct 108  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  4485197 attattcttatacacctttaagaaagataccaaaaagggcatggacttttaatgtttttctcagaaaaatattagatatactaaccaattttgatggcct 4485296  T
Q  109 tgagggtatccttggtggaattctgaaaatagagaaccaacttgtagttctttgaagtgttgttgtaactttgggatgcaatttccgctagttcttgttc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4485297 tgagggtatccttggtggaattctgaaaatagagaaccaacttgtagttctttgaagtgttgctgtaactttgggatgcaatttccgctagttcttgttc 4485396  T
Q  209 tttcccaatacgagagttaacatcaacgatcacaccaatggatataaccttggagtactcgtttataccatgtt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4485397 tttcccaatacgagagttaacatcaacgatcacaccaatggatataaccttggagtactcgtttataccatgtt 4485470  T

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Target: chr2; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 4489364 - 4489613
Alignment:
Q  10 attattcttagacacctttaagaaagatacccaaaagggcatggacttttaatgtttttctcagcaaatattagatatactaaccaattttgatggcctt 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4489364 attattcttatacacctttaagaaagatacccaaaagggcatggacttttaatgtttttctcagcaaatattagatatactaaccaattttgatggcctt 4489463  T
Q  110 gagggtatccttggtggaattctgaaaatagagaaccaacttgtagttctttgaagtgttgttgtaactttgggatgcaatttcc---gctagttcttgt 206  Q
    |||||||||||| ||||| ||||  || |||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||   |||| |||||||    
T  4489464 gagggtatcctttgtggagttcttgaagtagagagctaacttgtagttctttgaagtgttgttgtaactttgggctgcaatgtccatggctacttcttgt 4489563  T
Q  207 tctttcccaatacgagagttaacatcaacgatcacaccaatggatataac 256  Q
    ||||||||||||||||| | | |||||| |||||| || |||||||||||    
T  4489564 tctttcccaatacgagaatcaccatcaatgatcaccccgatggatataac 4489613  T

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