View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13218_high_31 (Length: 263)
Name: NF13218_high_31
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_high_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 12153476 - 12153710
Alignment:
| Q |
14 |
tataatggactctcatttgaaaggattaagttaaaaatggtaagagaaaaaacttaaattgtttgt--atgttttgagcactaaaaacttacttgtagct |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12153476 |
tataatcgactctcatttgaaaggattaagttaaaaatggtaagagaaaaaacttaaattgtttgtgtatgttttgagcactaaaaacttacttgtagct |
12153575 |
T |
|
| Q |
112 |
tgtatgcttgttggacttggattccgaattttaattattggtttcaccctcgatctcaatgtatctacacgacttaaatctttagagcctattacgaaat |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
12153576 |
tgtatg--------acttggattccgaattttaattattggtttcaccctcgatctcaatgtatctacacgacttagatctttagagcctattacgagat |
12153667 |
T |
|
| Q |
212 |
tattttcaagttaatattgggaaatcagtttcattatattctt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12153668 |
tattttcaagttaatattgggaaatcagtttcattattttctt |
12153710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University