View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_high_34 (Length: 250)

Name: NF13218_high_34
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_high_34
NF13218_high_34
[»] chr1 (3 HSPs)
chr1 (12-250)||(10875882-10876120)
chr1 (78-207)||(1556457-1556586)
chr1 (100-137)||(13821944-13821981)
[»] chr3 (5 HSPs)
chr3 (12-250)||(36126369-36126608)
chr3 (161-236)||(47410138-47410212)
chr3 (164-238)||(18721195-18721266)
chr3 (84-144)||(40771894-40771952)
chr3 (98-154)||(54751034-54751090)
[»] chr7 (1 HSPs)
chr7 (79-238)||(7427455-7427615)
[»] chr4 (1 HSPs)
chr4 (99-192)||(12871182-12871275)
[»] chr2 (1 HSPs)
chr2 (122-195)||(2941856-2941929)
[»] chr6 (1 HSPs)
chr6 (98-154)||(5309678-5309734)
[»] chr5 (1 HSPs)
chr5 (96-132)||(40324918-40324954)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 10875882 - 10876120
Alignment:
Q  12 atgaaacaagcaacaaaaatcaagcccgtgtctttgtccttaattttcaccatcctcacatacacttatacctatatataaaggagatacatagttttgg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10875882 atgaaacaagcaacaaaaatcaagcccgtgtctttgtccttaattttcaccatcctcacatacacttatacctatatataaaggagatacatagttttgg 10875981  T
Q  112 tgtagtattttttcttccaattataccattcatcaaaactattatgttcaccattttatcctttttacaatattacttaaaattttaattgaaaaaaggt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10875982 tgtagtattttttcttccaattataccattcatcaaaactattatgttcaccattttatcctttttacaatattacttaaaattttaattgaaaaaaggt 10876081  T
Q  212 agttacatctcattacaataggaacaaaatattttcaaa 250  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10876082 agttacatctcattacaataggaacaaaatcttttcaaa 10876120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 1556586 - 1556457
Alignment:
Q  78 tatacctatatataaa-ggagatacatagttttggtgtagtattttttcttccaattataccattcatcaaaactattatgttcaccattttatcctttt 176  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| |||||||| ||||||| | |  ||  ||||||||||  | || |||||||| ||||    
T  1556586 tatacctatatataaaaggaaatacataattatggtgtagtat-ttttcttctaattatatcttcgatttaaactattataattacaattttatcatttt 1556488  T
Q  177 tacaatattacttaaaattttaattgaaaaa 207  Q
    || ||||||| |||||  ||||||| |||||    
T  1556487 tataatattatttaaatctttaattaaaaaa 1556457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 13821981 - 13821944
Alignment:
Q  100 acatagttttggtgtagtattttttcttccaattatac 137  Q
    |||||||||||||||| || ||||||||||||||||||    
T  13821981 acatagttttggtgtaatactttttcttccaattatac 13821944  T

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Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 36126369 - 36126608
Alignment:
Q  12 atgaaacaagcaacaaaaatcaagcccgtgtctttgtccttaattttcaccatcctcacatacacttatacctatatataaaggagatacatagttttgg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36126369 atgaaacaagcaacaaaaatcaagcccgtgtctttgtccttaattttcaccatccttacatacacttatacctatatataaaggagatacatagttttgg 36126468  T
Q  112 tgtagtattttttcttccaattataccattcatcaaaactattatgtt-caccattttatcctttttacaatattacttaaaattttaattgaaaaaagg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36126469 tgtagtattttttcttccaattataccattcatcaaaactattatgttgaaccattttatcctttttacaatattacttaaaattttaattgaaaaaagg 36126568  T
Q  211 tagttacatctcattacaataggaacaaaatattttcaaa 250  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  36126569 tagttacatctcattacaataggaacaaaatcttttcaaa 36126608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 47410212 - 47410138
Alignment:
Q  161 accattttatcctttttacaatattacttaaaattttaattgaaaaaaggtagttacatctcattacaataggaac 236  Q
    |||||||||||||||||| ||||||||||||| | |||||| ||||||  |||||| ||||||||| |||||||||    
T  47410212 accattttatcctttttataatattacttaaactattaatt-aaaaaaaatagttaaatctcattaaaataggaac 47410138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 18721195 - 18721266
Alignment:
Q  164 attttatcctttttacaatattacttaaaattttaattgaaaaaaggtagttacatctcattacaataggaacaa 238  Q
    ||||||||||||||| ||||||||||||| | |||||| |||||   |||||| ||||||||| |||||||||||    
T  18721195 attttatcctttttataatattacttaaattattaattaaaaaa---tagttaaatctcattaaaataggaacaa 18721266  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 40771894 - 40771952
Alignment:
Q  84 tatatataaaggagatacatagttttggtgtagtattttttcttccaattataccattcat 144  Q
    ||||||||||| |||||||| ||||||||||||||  |||| || ||||||||||||||||    
T  40771894 tatatataaag-agatacatggttttggtgtagta-cttttatttcaattataccattcat 40771952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 54751090 - 54751034
Alignment:
Q  98 atacatagttttggtgtagtattttttcttccaattataccattcatcaaaactatt 154  Q
    ||||||||||||||||| ||||||||| |||||| ||||| ||| ||  ||||||||    
T  54751090 atacatagttttggtgttgtattttttattccaactatacaatttatgtaaactatt 54751034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 7427455 - 7427615
Alignment:
Q  79 atacctatatataaaggagatacatagttttggtgtagtattttttcttccaattataccattcatcaaaactattatgttcaccattttatccttttta 178  Q
    ||||||||||||||| |  |||| |||||| ||||||||||||||||||||||||||||| |||||  ||| ||| || || || |||||||||||||||    
T  7427455 atacctatatataaacggaatacttagtttaggtgtagtattttttcttccaattatacccttcatttaaaatatcatatttacaattttatccttttta 7427554  T
Q  179 caatattacttaaaattttaatt-gaaaaaaggtagttacatctcattacaataggaacaa 238  Q
     ||||||| |||||  |||||||  ||||||   ||||| |||||||| ||||||||||||    
T  7427555 taatattatttaaatctttaattaaaaaaaaaaaagttaaatctcattgcaataggaacaa 7427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 12871182 - 12871275
Alignment:
Q  99 tacatagttttggtgtagtattttttcttccaattataccattcatcaaaactattatgttcaccattttatcctttttacaatattacttaaa 192  Q
    ||||||||||||||||| || |||||||||| |||||| || ||||  |||||||| | || || || |||||| ||||| ||||||| |||||    
T  12871182 tacatagttttggtgtaatactttttcttcctattatagcaatcatttaaactattttatttacaatcttatccattttataatattaattaaa 12871275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 2941929 - 2941856
Alignment:
Q  122 tttcttccaattataccattcatcaaaactattatgttcaccattttatcctttttacaatattacttaaaatt 195  Q
    ||||||||||||||  |||||||  ||| |||||| || || |||||||| |||| | ||||||||||||||||    
T  2941929 tttcttccaattatgtcattcatttaaattattatatttactattttatcattttgataatattacttaaaatt 2941856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 5309734 - 5309678
Alignment:
Q  98 atacatagttttggtgtagtattttttcttccaattataccattcatcaaaactatt 154  Q
    ||||||||||||||||| ||||||||| |||||| ||||| ||| ||  ||||||||    
T  5309734 atacatagttttggtgttgtattttttattccaactatacaatttatgtaaactatt 5309678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 40324918 - 40324954
Alignment:
Q  96 agatacatagttttggtgtagtattttttcttccaat 132  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  40324918 agatacatagttttggtgtagtaatttttctttcaat 40324954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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