View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_high_5 (Length: 646)

Name: NF13218_high_5
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_high_5
NF13218_high_5
[»] chr4 (2 HSPs)
chr4 (10-378)||(16864578-16864943)
chr4 (383-627)||(16862763-16863007)
[»] chr6 (2 HSPs)
chr6 (386-627)||(17535224-17535465)
chr6 (386-543)||(28106645-28106802)
[»] chr3 (3 HSPs)
chr3 (44-255)||(20543659-20543870)
chr3 (386-627)||(20541714-20541956)
chr3 (558-621)||(601510-601573)
[»] chr8 (2 HSPs)
chr8 (386-627)||(40613366-40613607)
chr8 (13-255)||(40611401-40611644)
[»] chr7 (4 HSPs)
chr7 (112-366)||(3037246-3037497)
chr7 (464-627)||(3035251-3035414)
chr7 (387-468)||(3036173-3036256)
chr7 (439-621)||(46434245-46434427)
[»] chr5 (2 HSPs)
chr5 (392-562)||(20528454-20528622)
chr5 (13-237)||(20530357-20530581)
[»] chr1 (1 HSPs)
chr1 (475-582)||(23940391-23940498)
[»] chr2 (1 HSPs)
chr2 (446-495)||(45341806-45341855)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 16864943 - 16864578
Alignment:
Q  10 attattctcatttatatcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgtt 109  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  16864943 attattctcatttatatcatcgagaggaggcatctcaggatcaatttgatttacttgctcatcagttgtgaattctataacatcatcatcaattagtgtt 16864844  T
Q  110 gaacttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcat 209  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16864843 gaacttgattgagtgttttcattaccattctagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcat 16864744  T
Q  210 gtagcttataagcttttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttcttcctctgagagtatgacacatgaac 309  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||    
T  16864743 gtagcttataagctttttattcttcactcaaaccaagcagaatacacctag---tactcttatcatctaacttcttcctctgagagtctgacacatgaac 16864647  T
Q  310 ataagaaatacatcccaaaattctaaaatactttactgaaggttgcacaccactccacatgaacatatc 378  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16864646 ataagaaatacatccaaaaattctaaaatactttactgaaggttgcacaccactccacatgaacatatc 16864578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 383 - 627
Target Start/End: Complemental strand, 16863007 - 16862763
Alignment:
Q  383 gcggaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaaga 482  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  16863007 gcggaaccttgatacttcctacgcattgcatcccaaatatccttagctgaatctttaaccaatctagtttccatgattgttctatcaatggattgaaaga 16862908  T
Q  483 gatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagcaatggtgacaccattttcaat 582  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16862907 gatagtttttcaccttaagatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagcaatggtgacaccattttcaat 16862808  T
Q  583 taaatcccaaaactctttggaacgtagaagattttccataagcat 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16862807 taaatcccaaaactctttggaacgtagaagattttccataagcat 16862763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 386 - 627
Target Start/End: Complemental strand, 17535465 - 17535224
Alignment:
Q  386 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 485  Q
    |||||||||||||| ||||||||||  |||||||||||||||| ||||| |||||| || || |||||||||||||||||||| ||||||||||| ||||    
T  17535465 gaaccttgatactttctacgcattgcctcccaaatatccttagatgaatctttaactaaaatggtttccatgattgttctatcgatggattgaaaaagat 17535366  T
Q  486 agtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagcaatggtgacaccattttcaattaa 585  Q
    |||| || ||||||  |||||| |||||||| || |||||| | |||||||| ||| |||||||||||||| ||||||  ||||||||| ||||||||||    
T  17535365 agttctttaccttaagatcaagtagtttactgtcttttgcaaccttttcttgctctagtgttggattctcaggagcaacagtgacaccaatttcaattaa 17535266  T
Q  586 atcccaaaactctttggaacgtagaagattttccataagcat 627  Q
    ||||||||||||||||||||  ||||| || |||||||||||    
T  17535265 atcccaaaactctttggaacaaagaaggttctccataagcat 17535224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 386 - 543
Target Start/End: Complemental strand, 28106802 - 28106645
Alignment:
Q  386 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 485  Q
    |||||||||| |||||||||||| | ||||| |||||| || ||||||| ||| ||||||||  || ||||||||||||||||||||||||||||||| |    
T  28106802 gaaccttgatgcttcctacgcatagcatcccgaatatcattggctgaatttttgaccaatattattaccatgattgttctatcaatggattgaaagaggt 28106703  T
Q  486 agtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctgg 543  Q
    |||| || || |||  ||||   || |||||||| ||||||||||| |||||||||||    
T  28106702 agttctttactttaagatcacatagcttactatcttttgcagctttctcttgttctgg 28106645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 20543870 - 20543659
Alignment:
Q  44 tcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgttgaacttgattgagtgttttcattatcattccagt 143  Q
    ||||| ||| ||||||||| ||||||||||||||| |||||||| ||||||||||| || |  ||||||||||||||||||||||||||  |||||||||    
T  20543870 tcaggttcagtttgatttactggctcatcagttgtaaattctatcacatcatcatctatcaaggttgaacttgattgagtgttttcattcccattccagt 20543771  T
Q  144 tccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgtagcttataagcttttgattcttcactcaaacc 243  Q
    |||||||||||| ||||||||||| |||||||||| |||| |||||||||||||| || || ||||  | ||||||||||||||||||||||||||||||    
T  20543770 tccatccttgtgtttcttcaaatacaacatccctgctaattaccactttcttattcttggggtcatacaacttataagcttttgattcttcactcaaacc 20543671  T
Q  244 aagcagaataca 255  Q
    ||| ||||||||    
T  20543670 aagtagaataca 20543659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 386 - 627
Target Start/End: Complemental strand, 20541956 - 20541714
Alignment:
Q  386 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 485  Q
    |||||||||||||| |||||||| | ||||||||||||||| | ||||| ||||||||  || |||||||||||| ||||||||||||||||||| ||||    
T  20541956 gaaccttgatactttctacgcatagcatcccaaatatcctttgttgaatctttaaccagaatggtttccatgatttttctatcaatggattgaaaaagat 20541857  T
Q  486 agtttttc-accttataatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagcaatggtgacaccattttcaatta 584  Q
    |||||||  |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |  ||| |||||| ||    
T  20541856 agtttttttacctttagatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattttcaggagcaattgtaattccagtttcaacta 20541757  T
Q  585 aatcccaaaactctttggaacgtagaagattttccataagcat 627  Q
    | |||||| ||||||||||||| || ||||||| |||||||||    
T  20541756 agtcccaatactctttggaacgaaggagattttgcataagcat 20541714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 621
Target Start/End: Complemental strand, 601573 - 601510
Alignment:
Q  558 gagcaatggtgacaccattttcaattaaatcccaaaactctttggaacgtagaagattttccat 621  Q
    |||||||||| ||||||| |||||| | || |||| ||||||||||||| |||||||| |||||    
T  601573 gagcaatggtaacaccatgttcaatgagattccaatactctttggaacgaagaagattctccat 601510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 386 - 627
Target Start/End: Original strand, 40613366 - 40613607
Alignment:
Q  386 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 485  Q
    |||||||||||||| || ||||| | ||||||||||||||| ||||||| ||||||||  || ||||| |||||| ||||||||||||||||||| ||||    
T  40613366 gaaccttgatactttctgcgcatggcatcccaaatatcctttgctgaatctttaaccataatggtttctatgatttttctatcaatggattgaaaaagat 40613465  T
Q  486 agtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagcaatggtgacaccattttcaattaa 585  Q
    ||||||| |||||   |||||||||||||||||||||||||   ||||||||||||||||||||||| ||| ||||||| || || ||| ||||||  ||    
T  40613466 agttttttacctttagatcaagaagtttactatcctttgcaaaattttcttgttctggtgttggattttcaggagcaattgtaactccagtttcaaccaa 40613565  T
Q  586 atcccaaaactctttggaacgtagaagattttccataagcat 627  Q
     |||||| |||||||||||||||| | ||||||||| |||||    
T  40613566 gtcccaatactctttggaacgtaggaaattttccatcagcat 40613607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 40611401 - 40611644
Alignment:
Q  13 attctcatttatatcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagtt-gtgaattctataacatcatcatcaattagtgttga 111  Q
    |||| ||||| ||||||||| |  || ||| ||||| ||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| || |  |||||    
T  40611401 attcccatttgtatcatcaataccagtcatttcaggttcactttgatttactggctcatcagtttgtgaattctatcacatcatcatctatcaaggttga 40611500  T
Q  112 acttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgt 211  Q
    |||||||||||||||||||||  ||||||||||||||||||||| |||||||||   || ||||||| |||| |||||||||||||| || || ||||      
T  40611501 acttgattgagtgttttcattcccattccagttccatccttgtgtttcttcaaaatcaaaatccctgctaattaccactttcttatttttggggtcatac 40611600  T
Q  212 agcttataagcttttgattcttcactcaaaccaagcagaataca 255  Q
    | |||||||||||||||||||||||| |||||||| ||||||||    
T  40611601 aacttataagcttttgattcttcacttaaaccaagtagaataca 40611644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 112 - 366
Target Start/End: Complemental strand, 3037497 - 3037246
Alignment:
Q  112 acttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgt 211  Q
    ||||| ||| |||||||| | | ||||| |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||  | |||||||||| |    
T  3037497 acttgtttgtgtgttttcgtcagcattcaagttccatccttgtgattcttcaaatataacatccctgctaatcaaaactttcttgctcttaggatcatat 3037398  T
Q  212 agcttataagcttttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttcttcctctgagagtatgacacatgaacat 311  Q
    ||||| |||||||||||||||||||| ||||| |  | ||||||| |||   ||||||||||||| |||||||  |||||||| | | | |||||   ||    
T  3037397 agcttgtaagcttttgattcttcacttaaacctaaaaaaatacacttag---tactcttatcatccaacttctctctctgagaatctaaaacatgtgaat 3037301  T
Q  312 aagaaatacatcccaaaattctaaaatactttactgaaggttgcacaccactcca 366  Q
    | | ||||||||| || | ||||||||  |  |||||||||| ||||||||||||    
T  3037300 atgcaatacatccaaatactctaaaatgatgcactgaaggtttcacaccactcca 3037246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 464 - 627
Target Start/End: Complemental strand, 3035414 - 3035251
Alignment:
Q  464 ctatcaatggattgaaagagatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagcaa 563  Q
    |||||||||||||| |||||||| || ||||| |||  ||||   || ||||||||||| ||| |||| |||||||||||||||||||||||  |||||     
T  3035414 ctatcaatggattggaagagataattcttcactttaagatcacacagcttactatccttcgcaactttctcttgttctggtgttggattctctggagcat 3035315  T
Q  564 tggtgacaccattttcaattaaatcccaaaactctttggaacgtagaagattttccataagcat 627  Q
    || ||| |||| ||||||| ||||||||||| | ||||||||| || |||||||||||||||||    
T  3035314 tgatgataccagtttcaataaaatcccaaaattgtttggaacgaagcagattttccataagcat 3035251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 3036256 - 3036173
Alignment:
Q  387 aaccttgatacttcctacgcattgtatcccaaatatcct--tagctgaatatttaaccaatatagtttccatgattgttctatc 468  Q
    |||||||||| ||||||| ||||| ||||||||||||||  ||| ||||| ||||||||| |  |||||||||  |||||||||    
T  3036256 aaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctatc 3036173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 621
Target Start/End: Original strand, 46434245 - 46434427
Alignment:
Q  439 aaccaatatagtttccatgattgttctatcaatggattgaaagagatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgt 538  Q
    |||||| || |||||||||||||  | |||||| ||||| |||||||| || || |||||  ||||| ||||||| || || | ||||  | ||  ||||    
T  46434245 aaccaaaatggtttccatgattgaacgatcaatagattggaagagataattctttaccttcaaatcacgaagtttgctttcatctgcaagtcttcgttgt 46434344  T
Q  539 tctggtgttggattctcaagagcaatggtgacaccattttcaattaaatcccaaaactctttggaacgtagaagattttccat 621  Q
    |||||||||| |||  || | |||| |||||||||||| || || | || |||  | ||||||||||| |||||||| |||||    
T  46434345 tctggtgttgcattagcaggtgcaacggtgacaccattctctataagatgccagtattctttggaacgaagaagattctccat 46434427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 392 - 562
Target Start/End: Complemental strand, 20528622 - 20528454
Alignment:
Q  392 tgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagatagtttt 491  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| | |||  |  ||||| ||||||||||||||||||||   ||||||||||| |    
T  20528622 tgatacttcctacgcattgcatcccaaatatccttagctgaatctttgatcaagtttctttccttgattgttctatcaatggat--gaagagatagttct 20528525  T
Q  492 tcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagca 562  Q
    ||||||||  ||||  ||| ||||||||||| ||| |||| ||||||||||| |||||||| ||| |||||    
T  20528524 tcaccttaagatcacaaagcttactatccttcgcaactttctcttgttctggagttggattttcaggagca 20528454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 20530581 - 20530357
Alignment:
Q  13 attctcatttatatcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgttgaa 112  Q
    ||||||| ||||||| |||||   |||||||| |||||| | || ||| | |||| ||||| ||||||| ||||| ||||||||||||| |||| ||  |    
T  20530581 attctcacttatatcttcaagcttaggcatcttaggatctacttcattcactggcacatcatttgtgaactctatcacatcatcatcaactagtatttta 20530482  T
Q  113 cttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgta 212  Q
    |||| ||  | ||||     | ||||||||||||| |||||||||||||| ||||| |||||  |  | ||||| | ||||||  | ||||| |||| ||    
T  20530481 cttgcttatgagtttgttgcagcattccagttccaaccttgtgattcttccaatatgacatctttacttatcacaagtttcttgcttttagggtcatata 20530382  T
Q  213 gcttataagcttttgattcttcact 237  Q
    ||||||||||||| |||| ||||||    
T  20530381 gcttataagctttagattattcact 20530357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 475 - 582
Target Start/End: Original strand, 23940391 - 23940498
Alignment:
Q  475 ttgaaagagatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagcaatggtgacacca 574  Q
    |||||| |||||||| || |||| |  ||||  ||||||| ||||||||||||||||||||| |||||||||||||||   | ||||||||||||||| |    
T  23940391 ttgaaaaagatagttatttacctaaagatcacaaagtttattatcctttgcagctttttcttattctggtgttggatttgtaggagcaatggtgacacaa 23940490  T
Q  575 ttttcaat 582  Q
    || |||||    
T  23940491 ttctcaat 23940498  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 45341855 - 45341806
Alignment:
Q  446 atagtttccatgattgttctatcaatggattgaaagagatagtttttcac 495  Q
    ||||| ||||||||  |||| |||||||| ||||||||||||||||||||    
T  45341855 atagtctccatgatgtttctttcaatggactgaaagagatagtttttcac 45341806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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