View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_high_9 (Length: 493)

Name: NF13218_high_9
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_high_9
NF13218_high_9
[»] chr3 (2 HSPs)
chr3 (1-220)||(12088054-12088273)
chr3 (247-425)||(12088459-12088639)
[»] chr5 (3 HSPs)
chr5 (166-234)||(24562825-24562893)
chr5 (166-234)||(24603859-24603927)
chr5 (151-206)||(17445945-17446000)
[»] chr6 (2 HSPs)
chr6 (177-234)||(8885819-8885876)
chr6 (151-234)||(977343-977426)
[»] chr1 (1 HSPs)
chr1 (53-191)||(20410110-20410244)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 12088054 - 12088273
Alignment:
Q  1 cacagaacacacaacaacgacaaagggatgaaaatacatttcagaacatatgatcagaacatatgaagcaacataaaataacaacagcatacaatcattt 100  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  12088054 cacaaaacacacaacaacgacaaaggggtgaaaatacatttcaaaacatatgatcagaacagatgaaacaacataaaataacaacagcatacaatcattt 12088153  T
Q  101 caccattagcatcaacgttcatacacatcattcacaagatcaattactatcaaaacatcatcacgtatatgcgagaatgcaactctttcctatcacctat 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  12088154 caccattagcatcaacgttcatacacatcattcacaacatcaattactatcaaaacatcatcatgtatatacgagaatgcaactctttcctatcacctat 12088253  T
Q  201 atgcataccggtatcggttt 220  Q
    ||  |||| |||||||||||    
T  12088254 atatatactggtatcggttt 12088273  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 247 - 425
Target Start/End: Original strand, 12088459 - 12088639
Alignment:
Q  247 cctgagcaatacaacacatcacgaatcatcacctgaattctaattatg--atgatgcatgaagactcaccatatatagacaacaacaattcatcacaaat 344  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12088459 cctgagcaatacaacacatcaccaatcatcaccaaaattctaattatgttatgatgcatgaagactcaccatatataaacaacaacaattcatcacaaat 12088558  T
Q  345 gttcatcaccctaagacttttatttaacttcaccatttattatcaccgtaatattcatttatcatcaccaataatcatcaa 425  Q
     ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12088559 attcatcaccctaagacttttatttagcatcaccatttattatcaccgtaatattaatttatcatcaccaataatcatcaa 12088639  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 24562825 - 24562893
Alignment:
Q  166 tatatgcgagaatgcaactctttcctatcacctatatgcataccggtatcggtttctactcatcaaaat 234  Q
    |||||||||  |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||    
T  24562825 tatatgcgaagatgcaactctttcctaacacctatatgcatgccggtatcggtatctactcaacaaaat 24562893  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 24603859 - 24603927
Alignment:
Q  166 tatatgcgagaatgcaactctttcctatcacctatatgcataccggtatcggtttctactcatcaaaat 234  Q
    |||||||||  |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||    
T  24603859 tatatgcgaagatgcaactctttcctaacacctatatgcatgccggtatcggtatctactcaacaaaat 24603927  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 17445945 - 17446000
Alignment:
Q  151 caaaacatcatcacgtatatgcgagaatgcaactctttcctatcacctatatgcat 206  Q
    ||||| ||||||| ||||||||||  |||||||||||||||| |||| ||||||||    
T  17445945 caaaatatcatcatgtatatgcgaagatgcaactctttcctaacacccatatgcat 17446000  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 8885819 - 8885876
Alignment:
Q  177 atgcaactctttcctatcacctatatgcataccggtatcggtttctactcatcaaaat 234  Q
    ||||||||| ||||||||||| ||||||||||||||| |||| |||||||| ||||||    
T  8885819 atgcaactccttcctatcacccatatgcataccggtaccggtctctactcaccaaaat 8885876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 977343 - 977426
Alignment:
Q  151 caaaacatcatcacgtatatgcgagaatgcaactctttcctatcacctatatgcataccggtatcggtttctactcatcaaaat 234  Q
    ||||| ||||| | |||||||| |  ||| |||||||||||| ||||||||||||| ||||||||| | |||||||| ||||||    
T  977343 caaaatatcatgatgtatatgcaaagatgtaactctttcctaacacctatatgcatgccggtatcgatctctactcaccaaaat 977426  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 20410244 - 20410110
Alignment:
Q  53 atcagaacatatgaagcaacataaaataacaacagcatacaatcatttcaccattagcatcaacgttcatacacatcattcacaagatcaattactatca 152  Q
    ||||||| | || ||||||||| ||||||||||| |||| ||||||  || |||||| ||  ||  || | ||||||||||||||  ||||||||||||     
T  20410244 atcagaatagataaagcaacatgaaataacaacaacataaaatcat--catcattagtattcacactcgtgcacatcattcacaatgtcaattactatc- 20410148  T
Q  153 aaacatcatcacgtatatgcgagaatgcaactctttcct 191  Q
    ||||||||||| |||||||| || ||| |||||||||||    
T  20410147 aaacatcatcatgtatatgctag-atggaactctttcct 20410110  T

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