View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_low_16 (Length: 439)

Name: NF13218_low_16
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_low_16
NF13218_low_16
[»] chr1 (3 HSPs)
chr1 (45-423)||(10876162-10876539)
chr1 (119-150)||(42485172-42485203)
chr1 (45-133)||(1379007-1379095)
[»] chr3 (3 HSPs)
chr3 (45-420)||(36126637-36127020)
chr3 (46-144)||(15566500-15566597)
chr3 (73-151)||(34844469-34844547)
[»] chr5 (1 HSPs)
chr5 (46-144)||(19145412-19145510)
[»] chr7 (3 HSPs)
chr7 (46-144)||(654705-654802)
chr7 (100-148)||(32087208-32087256)
chr7 (46-133)||(42913513-42913601)


Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 45 - 423
Target Start/End: Original strand, 10876162 - 10876539
Alignment:
Q  45 aaaaactcggtatctggtctaagagccaactaatctggggggactaatcccaccatccactagcaggggtctggttaaagccagagcaaagctctgtatg 144  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10876162 aaaaactcggtatctggtctaagagccaaataatctgggg-gactaatcccaccatccactagcaggggtctggttaaagccagagcaaagccctgtatg 10876260  T
Q  145 aactagtttgaacctgagacctcaagaggaacacaggacgaggtttaagtctacaaaaccaggtcaaccccggaggttcatagggaacttatttcgatct 244  Q
    |||||||||||||||||||||||||||||| |||||  ||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  10876261 aactagtttgaacctgagacctcaagaggagcacagaccgaggttcaagtctacaccaccaggtcaaccccggaggttcatagggaacttatttcgatct 10876360  T
Q  245 tatctaccaaaattatttgagtgcggtatatgctaaaaaatttaagcatgttagtgaccgtttttgtgacagtgataattaggcaaagaatgatgaaatg 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  10876361 tatctaccaaaattatttgagtgcggtatatgctaaaaaatttaagcatgttagtgaccgtttttgcgccagtgataattaggcaaagaatgatgaaatg 10876460  T
Q  345 agaagtattatacctcattttagtgctgaaagggtttgaataaccagtcttcccttgaaagagtataacagttcttagt 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10876461 agaagtattatacctcattttagtgctgaaagggtttgaataaccagtcttcccttgaaagagtataacagttcttagt 10876539  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 150
Target Start/End: Original strand, 42485172 - 42485203
Alignment:
Q  119 ttaaagccagagcaaagctctgtatgaactag 150  Q
    ||||||||||||||||||||||||||||||||    
T  42485172 ttaaagccagagcaaagctctgtatgaactag 42485203  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 1379095 - 1379007
Alignment:
Q  45 aaaaactcggtatctggtctaagagccaactaatctggggggactaatcccaccatccactagcaggggtctggttaaagccagagcaa 133  Q
    |||| ||||||||| | |||||||  | ||||||||| |||||| |||| |||| |||||| || |||| | | |||||||||||||||    
T  1379095 aaaagctcggtatccgatctaagaatcgactaatctgaggggaccaatctcaccgtccacttgcgggggcccgtttaaagccagagcaa 1379007  T

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Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 45 - 420
Target Start/End: Original strand, 36126637 - 36127020
Alignment:
Q  45 aaaaactcggtatctggtctaagagccaactaatctggggggactaatcccaccatccactagcaggggtctggttaaagccagagcaaagctctgtatg 144  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  36126637 aaaaactcggtatcgggtctaagagccaactaatctgggag-actaatcccaccatccactagcaggggtctggttaaagccagagcaaagccctatatg 36126735  T
Q  145 aactagtttgaacctgagacctcaagaggaacacaggacgaggtttaagtctacaaaaccaggtcaaccccggaggttcatagggaacttatttcgatct 244  Q
    |||||||||||||||||||||||||||||| |||||  ||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  36126736 aactagtttgaacctgagacctcaagaggagcacagtccgaggttcaagtctacaccaccaggtcaaccccggaggttcatagggaacttatttcgatct 36126835  T
Q  245 tatctaccaaaattatttgagtgcggtatatgctaaaaaatttaagcatgttagtgaccgtttttgtgacagtgataattaggcaaagaatgatgaaatg 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  36126836 tatctaccaaaattatttgagtgcggtatatgctaaaaaatttaagcatgttagtgaccgtttttgcgccagtgataattaggcaaagaatgatgaaatg 36126935  T
Q  345 agaag---------tattatacctcattttagtgctgaaagggtttgaataaccagtcttcccttgaaagagtataacagttctt 420  Q
    |||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36126936 agaagaatatgcaatattatacctcattttagtgctgaaagggtttgaataaccagtcttcccttgaaagagtataacagttctt 36127020  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 15566500 - 15566597
Alignment:
Q  46 aaaactcggtatctggtctaagagccaactaatctggggggactaatcccaccatccactagcaggggtctggttaaagccagagcaaagctctgtatg 144  Q
    ||||||||||||| | || ||||  | ||||||||| |||||| |||||||||  ||||| || |||| | | ||||||||||||| ||||||||||||    
T  15566500 aaaactcggtatccgatccaagaatcgactaatctgaggggaccaatcccaccgcccacttgcgggggcccgtttaaagccagagc-aagctctgtatg 15566597  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 34844547 - 34844469
Alignment:
Q  73 actaatctggggggactaatcccaccatccactagcaggggtctggttaaagccagagcaaagctctgtatgaactagt 151  Q
    ||||||| | |||| | |||||||||||||||| || |||| |   ||||||||| |||||||||||||||| ||||||    
T  34844547 actaatccgaggggtccaatcccaccatccacttgcgggggcccatttaaagccatagcaaagctctgtatgtactagt 34844469  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 19145412 - 19145510
Alignment:
Q  46 aaaactcggtatctggtctaagagccaactaatctggggggactaatcccaccatccactagcaggggtctggttaaagccagagcaaagctctgtatg 144  Q
    ||||||||||||| | || |||| |||||||||| | |||||| |||||||||  ||||| || |||| |   ||||||||||||||||||||||||||    
T  19145412 aaaactcggtatccgatccaagaaccaactaatccgaggggaccaatcccaccgcccacttgcgggggaccatttaaagccagagcaaagctctgtatg 19145510  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 654705 - 654802
Alignment:
Q  46 aaaactcggtatctggtctaagagccaactaatctggggggactaatcccaccatccactagcaggggtctggttaaagccagagcaaagctctgtatg 144  Q
    ||||||||||||| | || |||| || ||||||| | |||||| |||||||||  ||||| || |||| | | ||||||||||||| ||||||||||||    
T  654705 aaaactcggtatccgatccaagaaccgactaatccgaggggaccaatcccaccgcccacttgcgggggcccgtttaaagccagagc-aagctctgtatg 654802  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 32087256 - 32087208
Alignment:
Q  100 tccactagcaggggtctggttaaagccagagcaaagctctgtatgaact 148  Q
    |||||| ||||| ||||| ||||||| ||||||||||||| ||||||||    
T  32087256 tccacttgcaggagtctgtttaaagctagagcaaagctctatatgaact 32087208  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 42913513 - 42913601
Alignment:
Q  46 aaaactcggtatctggtctaagagccaactaatctggggggactaatcccaccatccactagcagggg-tctggttaaagccagagcaa 133  Q
    ||||||||||||| | |||||||  ||||||||| | |||||| ||||||||| |||||| || ||||  | | |||||||||||||||    
T  42913513 aaaactcggtatccgatctaagaatcaactaatccgaggggaccaatcccaccgtccacttgcgggggccccgtttaaagccagagcaa 42913601  T

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