View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13218_low_20 (Length: 390)
Name: NF13218_low_20
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_20 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 76 - 381
Target Start/End: Complemental strand, 33390369 - 33390064
Alignment:
| Q |
76 |
gtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggag |
175 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390369 |
gtacgtgatggtataattttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggag |
33390270 |
T |
|
| Q |
176 |
tgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390269 |
tgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatg |
33390170 |
T |
|
| Q |
276 |
ctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattga |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390169 |
ctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattga |
33390070 |
T |
|
| Q |
376 |
tgatgt |
381 |
Q |
| |
|
|||||| |
|
|
| T |
33390069 |
tgatgt |
33390064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 81 - 381
Target Start/End: Complemental strand, 33402906 - 33402606
Alignment:
| Q |
81 |
tgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaa |
180 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33402906 |
tgatgatataatgtttttgaacaacttttggaactttcaggccacaagctggagagattaaaaagattgttcaaaagataatgaatatattggagtgcaa |
33402807 |
T |
|
| Q |
181 |
ttcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctata |
280 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
33402806 |
atcttcatgtgtttcaaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttggttttggacttggttgatggtgttcgtgctata |
33402707 |
T |
|
| Q |
281 |
ggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||| ||||| |||||||||| |
|
|
| T |
33402706 |
agaatttgtggaatgggaggaatagggaagacaacccttgctatgaatttatatggccaaatctctcatcgatttagtgcatcctgtttcattgatgatg |
33402607 |
T |
|
| Q |
381 |
t |
381 |
Q |
| |
|
| |
|
|
| T |
33402606 |
t |
33402606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 76 - 381
Target Start/End: Original strand, 33642389 - 33642690
Alignment:
| Q |
76 |
gtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggag |
175 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||| |||||| |||||||| ||| |
|
|
| T |
33642389 |
gtacgtgatgatttaatgttattgaacaaa---ttgaa-tttcaggccacaagctgcagagattaaaaagattgttcaaaagataatcaatatattagag |
33642484 |
T |
|
| Q |
176 |
tgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatg |
275 |
Q |
| |
|
||||| |||| | ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33642485 |
tgcaagtctttaagtgtttcaaaagatttagttgggattgattctcctataaaagcattacaaaatcatttgcttttggactcagttgatggtgttcgtg |
33642584 |
T |
|
| Q |
276 |
ctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattga |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33642585 |
ctataggaatttgtggaatgggaggaatagggaagacaacccttgctacggctttatatgaccaaatatctcatcgatttagtgcatcatgttttattga |
33642684 |
T |
|
| Q |
376 |
tgatgt |
381 |
Q |
| |
|
|||||| |
|
|
| T |
33642685 |
tgatgt |
33642690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 89 - 381
Target Start/End: Original strand, 31566925 - 31567216
Alignment:
| Q |
89 |
taatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcat |
188 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
31566925 |
taatgttattgaacaacttttt-aactttcaggccacaatcttgagagattaaaaagattgctcaaacaataatgaatatattggagtgcaaatcttcat |
31567023 |
T |
|
| Q |
189 |
gtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttg |
288 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
31567024 |
gtgtttcaaaagatttagttgggattgattctcctatagaagcgttacaaaatcatttgcttttggactcgattgatggtgttcgtgctataggaatttg |
31567123 |
T |
|
| Q |
289 |
tggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
381 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
31567124 |
tggaatggggggaatagggaagacagcccttgctgagactttatatggccaaatatctcatcgatttagtgcatcttgttatattgatgatgt |
31567216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 82 - 381
Target Start/End: Complemental strand, 33059854 - 33059555
Alignment:
| Q |
82 |
gatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaat |
181 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||||||||| || | | || |||||| |||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
33059854 |
gatgatataatgttactgaacaattttttgaactttcaggccactagctagagaaattaaagagattgttcaaaagataatcaatatattggaatgcaaa |
33059755 |
T |
|
| Q |
182 |
tcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctatag |
281 |
Q |
| |
|
| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
33059754 |
tattcatgtgtttcaaaagatttagttgggattgattctcctatacaagcattacaaaatcatttgcttttgaactcagttgatggtgttcgtgctatag |
33059655 |
T |
|
| Q |
282 |
gaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
33059654 |
gaatttgtggaatgggaggaatagggaaaacaacccttgctacgactttatatggccaaatatctcatcaatttagtgcatcttgttttattgacgatgt |
33059555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 90 - 361
Target Start/End: Complemental strand, 33306772 - 33306498
Alignment:
| Q |
90 |
aatgttattgaacaacattttgaact---ttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttc |
186 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| ||| | |||||||||||||||||||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
33306772 |
aatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaaagataatgagtatattggagtgcaaatcttc |
33306673 |
T |
|
| Q |
187 |
atgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatt |
286 |
Q |
| |
|
|| | |||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
33306672 |
atatatttcaaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttgcttttggactcggttgattgtgtttgtgctataggaatt |
33306573 |
T |
|
| Q |
287 |
tgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgca |
361 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33306572 |
tctggaatgggaggaatagggaagacaacccttgctatggctttatatgaccaaatatctcatcgatttagtgca |
33306498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 112 - 379
Target Start/End: Complemental strand, 9169034 - 9168768
Alignment:
| Q |
112 |
aactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtaggg |
211 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||| |||| ||||||||| |||| ||||||||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
9169034 |
aactttcaggccacaatctgctgagactaaaaagattgtacaaaagataatgaacatat-ggagtgcaaatcttcatgtgtttcaaaagatttagttggg |
9168936 |
T |
|
| Q |
212 |
attgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaaga |
311 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9168935 |
attaattctcctatagaagcattacaaaatcatttgcttttggactcaattgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaaga |
9168836 |
T |
|
| Q |
312 |
caacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgat |
379 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9168835 |
caactcttgcaatggttttatatgaccaaatatctcatcgatttagtgcatcctgttttattgatgat |
9168768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 112 - 381
Target Start/End: Original strand, 31560628 - 31560897
Alignment:
| Q |
112 |
aactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtaggg |
211 |
Q |
| |
|
|||||||||||||||| | | ||||| ||||||||||||| | |||||||||||||||| ||| ||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
31560628 |
aactttcaggccacaatctcgagagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttggg |
31560727 |
T |
|
| Q |
212 |
attgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaaga |
311 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31560728 |
attaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgttcgtgttataggaatttgtggaatgggaggaatagggaaga |
31560827 |
T |
|
| Q |
312 |
caacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
381 |
Q |
| |
|
|| ||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31560828 |
cagcccttgctatgactttgtatggccaaatatctcatcgatttagtgcatcctgttttattgatgatgt |
31560897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 81 - 381
Target Start/End: Complemental strand, 33360371 - 33360071
Alignment:
| Q |
81 |
tgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaa |
180 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||| || | | || |||||| || ||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
33360371 |
tgatgatataatgttattgaacaactttttgaactttcaggccactagctagagaaattaaagaggttgttcaaaagataatcaatatattggaatgcaa |
33360272 |
T |
|
| Q |
181 |
ttcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctata |
280 |
Q |
| |
|
| |||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
33360271 |
atattcatgtgtttcaaaagatttagttgagattgattctcctatacaagcattacaaaatcatttgcttttgaactcggttgatggtgttcgtgctata |
33360172 |
T |
|
| Q |
281 |
ggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatg |
380 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||| |||||| ||||| | |||||||||| || |||||||||||||| |
|
|
| T |
33360171 |
ggaatttgtggaattggaggaattgggaaaacaacccttgctacgactttatatggccaaatctctcaccaatttagtgcatctttttttattgatgatg |
33360072 |
T |
|
| Q |
381 |
t |
381 |
Q |
| |
|
| |
|
|
| T |
33360071 |
t |
33360071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 76 - 381
Target Start/End: Complemental strand, 33274089 - 33273784
Alignment:
| Q |
76 |
gtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggag |
175 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||||||| |||||| |||| ||| |||||||||||||||||||||| ||| ||||||||||| || |
|
|
| T |
33274089 |
gtacgtgatgatataatattattgaaaaattttttgaacttacaggccgcaagctggagagattaaaaagattgttcaaacgatcttgaatatattgaag |
33273990 |
T |
|
| Q |
176 |
tgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatg |
275 |
Q |
| |
|
| ||| ||||||||| |||| ||||||||||| ||||| ||||||| | |||| | ||||||||||||||| ||||||||||| ||||| |||||| || |
|
|
| T |
33273989 |
tacaaatcttcatgtttttcaaaagatttagttgggatagattctcgtttagacggattacaaaatcatttacttttggactcggttgacagtgttcgtg |
33273890 |
T |
|
| Q |
276 |
ctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattga |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||| || |
|
|
| T |
33273889 |
ctataggaatttgtggaatgggaggaatagggaagacaacccttgctatggctttatatgatcaaatatctcatcgatttagtgcatcctgttttataga |
33273790 |
T |
|
| Q |
376 |
tgatgt |
381 |
Q |
| |
|
|||||| |
|
|
| T |
33273789 |
tgatgt |
33273784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 76 - 381
Target Start/End: Complemental strand, 33412250 - 33411945
Alignment:
| Q |
76 |
gtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggag |
175 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33412250 |
gtacgtgatgatataatgttattgaacaactttctgaactttcaggccacaagctggagagattaaaaagattgttcaaaatataatgaatatattggat |
33412151 |
T |
|
| Q |
176 |
tgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatg |
275 |
Q |
| |
|
|| || ||||||| |||| ||||||||||| ||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||| || |
|
|
| T |
33412150 |
tgtaaatcttcattcatttcaaaagatttagttgggataaattctcggatagaagtattacaaaatcatttacttttggactcggttgatggtgtttgtg |
33412051 |
T |
|
| Q |
276 |
ctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattga |
375 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||| |||||||||| |||||||||| ||||||||| || |
|
|
| T |
33412050 |
ctattggaatttgtggaatgggcggaataggaaagacaacccttgctatgactttatatggccagatatctcatcaatttagtgcatcttgttttataga |
33411951 |
T |
|
| Q |
376 |
tgatgt |
381 |
Q |
| |
|
||||| |
|
|
| T |
33411950 |
cgatgt |
33411945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 76 - 381
Target Start/End: Complemental strand, 33264946 - 33264641
Alignment:
| Q |
76 |
gtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggag |
175 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||||||| |||||| |||| ||| |||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
33264946 |
gtacgtgatgatataatattattgaataattttttgaacttacaggccgcaagctggagagattaaaaagattgttcaaaagataatgagtacattggaa |
33264847 |
T |
|
| Q |
176 |
tgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatg |
275 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| | ||| ||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||| || |
|
|
| T |
33264846 |
tgcaaatcttcatgtgtttcaaaagacttagttgcgatagattctcgtttagaagcattacaaaatcatttccttttggacatggttgatggtgttcgtg |
33264747 |
T |
|
| Q |
276 |
ctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattga |
375 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| | |||||||||| |||| ||||| ||||| |
|
|
| T |
33264746 |
ctataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaaatctgtcatcgatttgatgcatcctgtttcattga |
33264647 |
T |
|
| Q |
376 |
tgatgt |
381 |
Q |
| |
|
|||||| |
|
|
| T |
33264646 |
tgatgt |
33264641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 89 - 381
Target Start/End: Complemental strand, 33287826 - 33287534
Alignment:
| Q |
89 |
taatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcat |
188 |
Q |
| |
|
|||| |||||||||||| |||||||| | |||||||||| || ||||||| || ||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
33287826 |
taatattattgaacaactttttgaacgtccaggccacaatctgcagagattagaatgattgttcagacgataatgaatatattggagtgcaaatcttcat |
33287727 |
T |
|
| Q |
189 |
gtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttg |
288 |
Q |
| |
|
| ||||| ||||||||||| | |||| |||||||||||||||| ||||||| |||||||| |||||| || |||||||| |||| ||| ||||||||||| |
|
|
| T |
33287726 |
gggtttcaaaagatttagttgcgattaattctcctatagaagccttacaaagtcatttgcatttggattcggttgatggagttcgtgcaataggaatttg |
33287627 |
T |
|
| Q |
289 |
tggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
381 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||| |||||||||| |||||||| ||||||||||||| | |||||||||||| ||||| |
|
|
| T |
33287626 |
tggaatgggaggaatagggaaaacaaccctttctatggctttatatgatcaaatatcccatcgatttagtggatcttgttttattgaagatgt |
33287534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 13609093 - 13609164
Alignment:
| Q |
250 |
tttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgc |
321 |
Q |
| |
|
||||||||||| ||||| ||||| | | |||| |||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
13609093 |
tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgc |
13609164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 112 - 381
Target Start/End: Original strand, 17438647 - 17438916
Alignment:
| Q |
112 |
aactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtaggg |
211 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||| |
|
|
| T |
17438647 |
aactttcaggccacaatgtgcagagattaaaaagattgttcaaaagataatgaatatattggaatgcaaatcttcatgtaattcaaaagatttagttggg |
17438746 |
T |
|
| Q |
212 |
attgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaaga |
311 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
17438747 |
ataaattctcgtatagaagcattaaaaaatcatttacttttggactcggttgatggtgttcgtgctataggaatttgggggatgggaggaatagggaaga |
17438846 |
T |
|
| Q |
312 |
caacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
381 |
Q |
| |
|
|||||||||| || |||||||| |||||| |||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
17438847 |
caacccttgctttggatttatatggccaaatctctcatcgatttgatgcatcttgtttcattgatgatgt |
17438916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 141 - 381
Target Start/End: Complemental strand, 8992 - 8752
Alignment:
| Q |
141 |
aaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaa |
240 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||| ||||||| ||||| ||||||||||| ||||| |||||| || |||||||||| || | |
|
|
| T |
8992 |
aaaagattgttcaaacgatcttgaatatattgaagtgcaaatcttcattcgtttcaaaagatttagttgggataaattctcgtacagaagcattaaaaca |
8893 |
T |
|
| Q |
241 |
tcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaa |
340 |
Q |
| |
|
||| || |||||| | || ||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
8892 |
tcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaa |
8793 |
T |
|
| Q |
341 |
atatctcatcgatttagtgcaaattgttttattgatgatgt |
381 |
Q |
| |
|
|| | |||||||||| |||| ||||| ||||||||||| |
|
|
| T |
8792 |
atctgtcatcgatttgatgcatcctgtttcattgatgatgt |
8752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 141 - 355
Target Start/End: Complemental strand, 231 - 17
Alignment:
| Q |
141 |
aaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaa |
240 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||| ||||||| ||||| ||||||||||| ||||| |||||| || |||||||||| || | |
|
|
| T |
231 |
aaaagattgttcaaacgatcttgaatatattgaagtgcaaatcttcattcgtttcaaaagatttagttgggataaattctcgtacagaagcattaaaaca |
132 |
T |
|
| Q |
241 |
tcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaa |
340 |
Q |
| |
|
||| || |||||| | || ||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
131 |
tcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaa |
32 |
T |
|
| Q |
341 |
atatctcatcgattt |
355 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
31 |
atctgtcatcgattt |
17 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 134 - 381
Target Start/End: Original strand, 31476812 - 31477062
Alignment:
| Q |
134 |
gagattaaaaagattgttcaaaggataatgaatatattggagtgcaa---ttcttcatgtgtttcgaaagatttagtagggattgattctcctatagaag |
230 |
Q |
| |
|
|||||||||||||| |||||| ||||||| | ||| ||||| |||| |||||| ||| ||| || |||||||| ||||| |||||||||| | ||| |
|
|
| T |
31476812 |
gagattaaaaagatagttcaacggataataactattttggacagcaaattatcttcaagtgcttcaaacgatttagttgggatggattctcctagacaag |
31476911 |
T |
|
| Q |
231 |
cattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgacttt |
330 |
Q |
| |
|
|||| |||| | ||| ||||||||||| ||||||| |||||||| | ||||||||||||| ||||| |||||||||||||||||||||| |||| | | |
|
|
| T |
31476912 |
aattagaaaagcttttacttttggactctgttgatgatgttcatgttgtaggaatttgtgggatgggtggaatagggaagacaacccttggcatggttct |
31477011 |
T |
|
| Q |
331 |
atatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
381 |
Q |
| |
|
|||||| ||| ||||||| |||| ||||| ||||||||||||||||| |
|
|
| T |
31477012 |
atatgatagaatttctcatcaatttggtgcatgctgttttattgatgatgt |
31477062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 137 - 381
Target Start/End: Original strand, 31501940 - 31502184
Alignment:
| Q |
137 |
attaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattac |
236 |
Q |
| |
|
|||||||| || || ||||||||||| ||||| ||||| ||||| || ||||||||||| ||||| |||| || |||| ||||| |||| |||||||| |
|
|
| T |
31501940 |
attaaaaatatcgtccaaaggataataaatattttggattgcaactcatcatgtgtttcaaaagacatagttggaattgtttctcatatacaagcattag |
31502039 |
T |
|
| Q |
237 |
aaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatga |
336 |
Q |
| |
|
|||| | ||| || |||||||| ||||||| |||||| ||| ||||||| ||||| ||||| |||||||||||||||||||||| | | | ||||||| |
|
|
| T |
31502040 |
aaaaacttttactcttggactctgttgatgatgttcaagctgtaggaatctgtgggatgggtggaatagggaagacaacccttggtagggttctatatga |
31502139 |
T |
|
| Q |
337 |
ccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
381 |
Q |
| |
|
||| ||||||| |||| ||||| ||||||||| |||||||| |
|
|
| T |
31502140 |
tagaatttctcatcaatttggtgcatgttgttttatcgatgatgt |
31502184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 31496768 - 31496955
Alignment:
| Q |
134 |
gagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcat |
233 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| ||||| ||||| ||| ||||||||| || |||||||| ||||| || |||| ||| || || |
|
|
| T |
31496768 |
gagattaaaaaaattgttcaaaggataatggatattttggattgcaaatctatatgtgtttcaaatgatttagttgggatggactctcatatgcaaaaat |
31496867 |
T |
|
| Q |
234 |
tacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgc |
321 |
Q |
| |
|
|| |||| | ||| ||||||||||| ||| ||| || || || |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
31496868 |
tagaaaagcttttacttttggactcggttaatgatggtcgtgtcataggaatttgtgggatgggaggaatagggaagactacccttgc |
31496955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 379
Target Start/End: Complemental strand, 31019913 - 31019782
Alignment:
| Q |
248 |
cttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctc |
347 |
Q |
| |
|
||||||||||| ||||||| ||||| | | ||||||||||||| ||||| ||||||||||||||||| || || | ||||||||| ||||| |||| |
|
|
| T |
31019913 |
cttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatctctc |
31019814 |
T |
|
| Q |
348 |
atcgatttagtgcaaattgttttattgatgat |
379 |
Q |
| |
|
||| |||| |||| |||||||||||||||| |
|
|
| T |
31019813 |
atcaatttgatgcacgttgttttattgatgat |
31019782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 31150508 - 31150388
Alignment:
| Q |
201 |
atttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggagg |
300 |
Q |
| |
|
||||||| ||||| |||||||| || | | |||| |||| ||||| ||||||||||| |||||| ||| | || | ||||||||||||| ||||| || |
|
|
| T |
31150508 |
atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtgg |
31150409 |
T |
|
| Q |
301 |
aatagggaagacaacccttgc |
321 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
31150408 |
agtagggaagacaacccttgc |
31150388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 379
Target Start/End: Complemental strand, 31029794 - 31029663
Alignment:
| Q |
248 |
cttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctc |
347 |
Q |
| |
|
||||||||||| ||||||| ||||| | | ||||||||||||| ||||| ||||||||||||||||| || | | ||||||||| ||||| |||| |
|
|
| T |
31029794 |
cttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctgactactgctttatatggtcaaatctctc |
31029695 |
T |
|
| Q |
348 |
atcgatttagtgcaaattgttttattgatgat |
379 |
Q |
| |
|
||| |||| |||| |||||||||||||||| |
|
|
| T |
31029694 |
atcaatttgatgcacgttgttttattgatgat |
31029663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 379
Target Start/End: Original strand, 31489633 - 31489764
Alignment:
| Q |
248 |
cttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctc |
347 |
Q |
| |
|
||||||||||| |||||| ||||| | | ||||||||||||| ||||| ||||||||||||||||| || || | ||||||||| ||||| |||| |
|
|
| T |
31489633 |
cttttggactccattgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatctctc |
31489732 |
T |
|
| Q |
348 |
atcgatttagtgcaaattgttttattgatgat |
379 |
Q |
| |
|
||| |||| |||| |||||||||||||||| |
|
|
| T |
31489733 |
atcaatttgatgcacgttgttttattgatgat |
31489764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 31159362 - 31159295
Alignment:
| Q |
248 |
cttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaac |
315 |
Q |
| |
|
||||||||||| ||||||| ||||| | | ||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
31159362 |
cttttggactccgttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaac |
31159295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 31161794 - 31161692
Alignment:
| Q |
209 |
gggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaataggga |
308 |
Q |
| |
|
||||| ||||||| || ||||| |||| |||| ||||| |||||||| || ||||||| ||| | | | ||||| ||||||| ||||| |||||||||| |
|
|
| T |
31161794 |
gggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgcgggttgtaggagtttgtgggatgggtggaataggga |
31161695 |
T |
|
| Q |
309 |
aga |
311 |
Q |
| |
|
||| |
|
|
| T |
31161694 |
aga |
31161692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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