View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13218_low_21 (Length: 379)
Name: NF13218_low_21
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 113 - 372
Target Start/End: Original strand, 25784193 - 25784452
Alignment:
| Q |
113 |
tttctagctgaccacaactcctcccaactgcgttgtgacaaatcttttccatataagcgcaattagagaaggtattggtcattcgaatggagcgccagag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| | |
|
|
| T |
25784193 |
tttctagctgaccacaactcctcccaactgcgttgtgacaaatcttttccatataagcgcgattagagcaggtatcggtcattcgaatggagcgccacat |
25784292 |
T |
|
| Q |
213 |
gaaaggatctttacatatattccaccatagagggcacacttgacatactctagtaactacgtcgaaggtattaagccttcggaaaatgttggttgtcaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25784293 |
gaaaggatctttacatatattccaccatagagggcacacttgacatacacttgtaactacgtcgaaggtattaagccttcggaaaatgttggttgtcaca |
25784392 |
T |
|
| Q |
313 |
tctcttggaagttcaagccaatttggttcatttgtgttttcagtttctacttctggttct |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25784393 |
tctcttggaagttcaagccaatttggttcatttgtgttttcagtttctacttctggttct |
25784452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 338
Target Start/End: Original strand, 14934529 - 14934638
Alignment:
| Q |
229 |
atattccaccatagagggcacacttgacatactctagtaactacgtcgaaggtattaagccttcggaaaatgttggttgtcacatctcttggaagttcaa |
328 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||| | || || | || | ||||||| ||| |||||| | |||||||||||||||||||||| |
|
|
| T |
14934529 |
atattccaccaaagagggcacacttgacatgcactagccaatatttcaatggcaccaagcctttggagaatgtttgcagtcacatctcttggaagttcaa |
14934628 |
T |
|
| Q |
329 |
gccaatttgg |
338 |
Q |
| |
|
|||||||||| |
|
|
| T |
14934629 |
gccaatttgg |
14934638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 14934305 - 14934437
Alignment:
| Q |
26 |
aaagcaagagaaaagagtatgaagtaaattaccaatcagctatgtattgaaggagatcatcagttgcaaaatacttgatattaatattttctagctgacc |
125 |
Q |
| |
|
||||||||| |||||| |||||| | | ||||| ||||||||||||| ||| |||||||||||| ||| || | |||| ||| | ||| |||||||| |
|
|
| T |
14934305 |
aaagcaagaaaaaagattatgaaattatttacctatcagctatgtatgcaagaagatcatcagttccaatgtagtcgatagcaatgtcttccagctgacc |
14934404 |
T |
|
| Q |
126 |
acaactcctcccaactgcgttgtgacaaatctt |
158 |
Q |
| |
|
|||||| | | ||||||| ||| |||||||||| |
|
|
| T |
14934405 |
acaacttcgcgcaactgcattgcgacaaatctt |
14934437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 338
Target Start/End: Original strand, 16955679 - 16955801
Alignment:
| Q |
216 |
aggatctttacatatattccaccatagagggcacacttgacatactctagtaactacgtcgaaggtattaagccttcggaaaatgttggttgtcacatct |
315 |
Q |
| |
|
|||||| || || ||||||||||||| |||||||||||||||||| || || || | || | |||| |||||| ||| |||||| ||| || |||| |
|
|
| T |
16955679 |
aggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgtttattgccaaatct |
16955778 |
T |
|
| Q |
316 |
cttggaagttcaagccaatttgg |
338 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
16955779 |
tttggtagttcaagccaatttgg |
16955801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 26023121 - 26023153
Alignment:
| Q |
65 |
ctatgtattgaaggagatcatcagttgcaaaat |
97 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
26023121 |
ctatgtattgaaggagatcatcagttccaaaat |
26023153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 29721090 - 29721037
Alignment:
| Q |
285 |
aagccttcggaaaatgttggttgtcacatctcttggaagttcaagccaatttgg |
338 |
Q |
| |
|
||||||| ||| ||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
29721090 |
aagccttgggagtatgttggttgtaaggtctcttggaagttcaagccaatttgg |
29721037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 29856923 - 29856870
Alignment:
| Q |
205 |
cgccagaggaaaggatctttacatatattccaccatagagggcacacttgacat |
258 |
Q |
| |
|
||||| |||| ||||||||||||||| | |||||||||||| || ||||||||| |
|
|
| T |
29856923 |
cgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacat |
29856870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 338
Target Start/End: Complemental strand, 30227432 - 30227292
Alignment:
| Q |
198 |
aatggagcgccagaggaaaggatctttacatatattccaccatagagggcacacttgacatactctagtaactacgtcgaaggtattaagccttcggaaa |
297 |
Q |
| |
|
||||| |||||| | || |||||| || || || |||||| ||||||| |||||||||||| | || || || | |||| |||| ||||||| | | | |
|
|
| T |
30227432 |
aatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaaga |
30227333 |
T |
|
| Q |
298 |
atgttggttgtcacatctcttggaagttcaagccaatttgg |
338 |
Q |
| |
|
||||| ||||| | ||||| |||||||||||||||||||| |
|
|
| T |
30227332 |
atgtttgttgtgatgtctctaggaagttcaagccaatttgg |
30227292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University