View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_low_23 (Length: 360)
Name: NF13218_low_23
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 6006910 - 6007245
Alignment:
| Q |
11 |
cataggaatagtcaaggcaaccttgaagcacaagcttccttaaaggaaatcctttctctgcaatagatgaaagcaatcgatccgagatatatgaatacga |
110 |
Q |
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| T |
6006910 |
cataggaatagtcaaggcaaccttgaagcacaagcttccttaaaggaaaacctttctctgcaatagatgaaagcaatcgatccgagatatatgaatacga |
6007009 |
T |
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| Q |
111 |
caaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaaatattgtgattaccaataccaaataacctcaatttactaaaagaaagagac |
210 |
Q |
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|||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6007010 |
caaatcaagacaagttaagcctttcaatttcaccaacgagtcaataaaaatattgtgattaccaataccaaatagcctcaatttactaaaagaaagagac |
6007109 |
T |
|
| Q |
211 |
ttcaaacccggcctctcgcaaatagcagaagcaaccccataatgagttatgaacgagcatttcaacatcacaatctcttctagaaactcacacctcttac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6007110 |
ttcaaacccggcctctcgcaaatagcagaagcaaccccataatgagttatgaacgagcatttcaacatcacaatctcttctagaaactcacacctcttac |
6007209 |
T |
|
| Q |
311 |
acatgttcaaaagcattgagtctttcatatagtaat |
346 |
Q |
| |
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| T |
6007210 |
acatgttcaaaagcattgagtctttcatatagtaat |
6007245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 1527673 - 1527559
Alignment:
| Q |
61 |
cctttctctgcaatagatgaaagcaatcgatccgagatatatgaatacgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaaa |
160 |
Q |
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| T |
1527673 |
cctttctctgcaacagatgaaagcaattcatctgggataaacgaatatgataaatcaagacaagttaagcccatcaaattcaccaacgactgaataaaaa |
1527574 |
T |
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| Q |
161 |
tattgtgattaccaa |
175 |
Q |
| |
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| ||| |||| |||| |
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| T |
1527573 |
tgttgagatttccaa |
1527559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 3438112 - 3438026
Alignment:
| Q |
69 |
tgcaatagatgaaagcaatcgatccgagatatatgaatacgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaat |
155 |
Q |
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| T |
3438112 |
tgcaatagaggaaagtaattcatccgggatacatgaagacgacaaatcaagacaagttaatcccttcagactcaccaacaagtcaat |
3438026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 12118776 - 12118663
Alignment:
| Q |
62 |
ctttctctgcaatagatgaaagcaatcgatccgagatatatgaatacgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaaat |
161 |
Q |
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| T |
12118776 |
ctttctctgcaacatatgaaagcaattcatctgggataaacgaatatgataaatcaagagaagttaagcccgtcaaattcaccaacgactcaataaagat |
12118677 |
T |
|
| Q |
162 |
attgtgattaccaa |
175 |
Q |
| |
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||| |||| |||| |
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| T |
12118676 |
gttgagatttccaa |
12118663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 547596 - 547641
Alignment:
| Q |
112 |
aaatcaatacaagttaagcccttcaatctcaccaacgagtcaataa |
157 |
Q |
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||||||| |||||||||||||||||| | || |||||||||||||| |
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| T |
547596 |
aaatcaagacaagttaagcccttcaaacacatcaacgagtcaataa |
547641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 547773 - 547845
Alignment:
| Q |
274 |
aacatcacaatctcttctagaaactcacacctcttacacatgttcaaaagcattgagtctttcatatagtaat |
346 |
Q |
| |
|
|||||||||| |||||| ||||||||||| || | ||||| || ||||||| |||||| || |||||||||| |
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| T |
547773 |
aacatcacaaactcttcgagaaactcacaactttgacacaagtgaaaaagcaatgagtcatttatatagtaat |
547845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 55908152 - 55908104
Alignment:
| Q |
107 |
acgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaat |
155 |
Q |
| |
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||||||||| || |||||||||||| ||||| |||||||||||| |||| |
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| T |
55908152 |
acgacaaattaagacaagttaagccattcaaactcaccaacgagccaat |
55908104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 44244811 - 44244869
Alignment:
| Q |
265 |
gagcatttcaacatcacaatctcttctagaaactcacacctcttacacatgttcaaaag |
323 |
Q |
| |
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| T |
44244811 |
gagcatttcaacatcctaacctcttcaagaaactcacaattcttacacatgttcaaaag |
44244869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 10615269 - 10615317
Alignment:
| Q |
111 |
caaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaa |
159 |
Q |
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|||||||| |||||| ||||||||||| |||||||| |||||||||||| |
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| T |
10615269 |
caaatcaagacaagtcaagcccttcaaactcaccaatgagtcaataaaa |
10615317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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