View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_low_24 (Length: 339)
Name: NF13218_low_24
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 39 - 339
Target Start/End: Original strand, 7801589 - 7801900
Alignment:
| Q |
39 |
aaacttgctacggttggcatatttgcaataatcaatgaactttttagatagaaaattccaaatacagaaacttgctatggttgcacatcgcaatcgt--a |
136 |
Q |
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| T |
7801589 |
aaacttgctacggttggcatatttgcaataatcaacgaactttttagatagaaaattcc-aatacagaaacttgctatggttgcacatcgcaatcgttga |
7801687 |
T |
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| Q |
137 |
tattacggaaaatcacagtcaattgcacccttaatcatggttgcattgtggtttcaccaacat----------nnnnnnnnnnntctgcagcccagattg |
226 |
Q |
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| T |
7801688 |
tattacggaaaatcacagtcaattgcgcccttaatcatggttgcattgaggtttcaccaacataaaaaaaaaaaaaaaaaaaaaactgcagcccagattg |
7801787 |
T |
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| Q |
227 |
aggttgcattgtgattataattaacaccatagctactatgaaaaggctagcacacatggaatgacagaaagaaggcacatcatcatcaccacttaatgat |
326 |
Q |
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| T |
7801788 |
aggttgcattgtgattataattaacaccatagctactatgaaaaggctagcacacatggaatgacagaaagaaggcacatcatcatcaccacttattgaa |
7801887 |
T |
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| Q |
327 |
aaaaattgaagat |
339 |
Q |
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| T |
7801888 |
aaaaattgaagat |
7801900 |
T |
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