View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_low_27 (Length: 305)
Name: NF13218_low_27
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 29071598 - 29071326
Alignment:
| Q |
13 |
aatataatggcatcaacccttttggcatcaacagcaataatgctaagttctctaattgctgtgttaatgagtagtagaaatgaggggagaagtgttgtat |
112 |
Q |
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| T |
29071598 |
aatataatggcatcaacccttttggcatcaacagcaataatgctaagttctctaattgctgtgttaatgagtagtagaaatgagggaagaagtgttgtat |
29071499 |
T |
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| Q |
113 |
cattagtggttggtgatagaactgagctagttttatcaatcaaatttttctccatattggtttgtttcatgttagctttcttgttaaatgttcaatctat |
212 |
Q |
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| T |
29071498 |
cgttagtgtttggtgatagaactgagctagttttatcaatcaaatttttctccatattggtttgtttcatgttagctttcttgttgaatgttcaatctat |
29071399 |
T |
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| Q |
213 |
aaggtactatagtcatgcaagcattctcatcaatgttcctttcaagaaactgtcatcaaaccttagacaacag |
285 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29071398 |
aaggtactatagtcatgcaagcatactcatcaatgttcctttcaagaaactatcatcaaaccttagacaacag |
29071326 |
T |
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