View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_low_3 (Length: 682)

Name: NF13218_low_3
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_low_3
NF13218_low_3
[»] chr8 (1 HSPs)
chr8 (12-665)||(498977-499633)


Alignment Details
Target: chr8 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 12 - 665
Target Start/End: Complemental strand, 499633 - 498977
Alignment:
Q  12 atgaaacggaatataatttaaaaagtagtaaacagcatgacaagaaccttgatccttggacgttataatcaacaaattattggaaatgaggttagtccaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  499633 atgaaacggaatataatttaaaaagtagtaaacagcatgacaagaaccttgatccttggacattataatcaacaaattattggaaatgaggttagtccaa 499534  T
Q  112 aacggatgagacgtttggcttcatgtgttggctttttcttcattgtttagcgattatcatcttaattaaaatacagcaaaagaatttcataatgtccaat 211  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499533 aacgggtgagacgtttggcttcatgtgttggctttttcttcattgtgtagcgattatcatcttaattaaaatacagcaaaagaatttcataatgtccaat 499434  T
Q  212 ttctttgacgtgaagtagagagacatgtatgtaaa--agtataccatagatcaataaatgttgttaaatcggtatagtattttggcatacacggtgtcaa 309  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  499433 ttctttgaggtgaagtagagagacatgtatgtaaaagagtataccatagatcaataaatgttgttaaaccggtatagtattttggcatacacggtgtcaa 499334  T
Q  310 aatttgcgtaggtgaaccaattataactc-acattttattaatcgatgannnnnnnnnnnnaggaccatcgatgaagaagtaagaacaatgaagcatatc 408  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  499333 aatttgcgtaggtgaaccaattataactctacattttattaatcgatgatttttattttttaggaccatcgatgaagaagtaagaacaatgaagcatatc 499234  T
Q  409 ctagggcattaagaagccacttttaccaagttctgaattttcagaaatcagaagttttctttaatagaaatgtggccgcaaactagatatgatggcctcc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499233 ctagggcattaagaagccacttttaccaagttctgaattttcagaaatcagaagttttctttaatagaaatgtggccgcaaactagatatgatggcctcc 499134  T
Q  509 cctagtgccactgccaccttgggtgtcaatgcttgtttaggaatagccatatgtggaagtacttgacacttccatctatggaggacataagcaaaaactc 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499133 cctagtgccactgccaccttgggtgtcaatgcttgtttaggaatagccatatgtggaagtacttgacacttccatctatggaggacataagcaaaaactc 499034  T
Q  609 ttggagtgagttttctttttcacaaactgataatgatgatcaagcttgtactttaat 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499033 ttggagtgagttttctttttcacaaactgataatgatgatcaagcttgtactttaat 498977  T

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