View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_low_31 (Length: 279)

Name: NF13218_low_31
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_low_31
NF13218_low_31
[»] chr4 (7 HSPs)
chr4 (1-257)||(21633479-21633734)
chr4 (1-109)||(36197093-36197201)
chr4 (165-252)||(20511792-20511880)
chr4 (165-257)||(36197225-36197316)
chr4 (184-257)||(20511953-20512020)
chr4 (1-50)||(20511628-20511677)
chr4 (72-109)||(20511729-20511766)
[»] chr2 (4 HSPs)
chr2 (1-257)||(13761976-13762234)
chr2 (1-264)||(24020106-24020373)
chr2 (165-257)||(25071694-25071786)
chr2 (21-109)||(25071579-25071667)
[»] chr8 (1 HSPs)
chr8 (1-257)||(39677585-39677840)
[»] chr6 (1 HSPs)
chr6 (1-255)||(22756651-22756911)
[»] chr5 (2 HSPs)
chr5 (21-109)||(16474982-16475069)
chr5 (165-257)||(16475097-16475181)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 21633734 - 21633479
Alignment:
Q  1 aattaaaaataacacattagttattgtaataaatgtcatgccttaaaaaagtctcgttagatttaaacgaatataatttatactttacatttaaacgaat 100  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21633734 aattaaaaataacacattaattattgtaataaataccatgccttaaaaaagtctcgttagatttaaacgaatataatttatactgtacatttaaacgaat 21633635  T
Q  101 ataaccttttgtaaccaaa-aaaacgaatataacctttggttnnnnnnnnnnnttgcatcatacttgtaacatttgtgtttttaatcttttatcatgact 199  Q
    ||||||||||||||||||| ||||||||||||||||||||||           ||||||||||| | |||||||||||||||||||||||||||||||||    
T  21633634 ataaccttttgtaaccaaaaaaaacgaatataacctttggtt--aaattttttttgcatcatacatataacatttgtgtttttaatcttttatcatgact 21633537  T
Q  200 acatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtgctacg 257  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21633536 acatgatttttatacaattgtgttagattttgctaaaataaaatacaactgtgctacg 21633479  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 36197093 - 36197201
Alignment:
Q  1 aattaaaaataacacattagttattgtaataaatgtcatgccttaaaaaagtctcgttagatttaaacgaatataatttatactttacatttaaacgaat 100  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  36197093 aattaaaaataacacattaattattgtaataaataccatgccttaaaaaaatctcgttagatttaaacgaatataatttataccgtacatttaaaagaat 36197192  T
Q  101 ataaccttt 109  Q
    |||||||||    
T  36197193 ataaccttt 36197201  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 20511792 - 20511880
Alignment:
Q  165 tgtaacatttgtgtttt-taatcttttatcatgactacatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtg 252  Q
    ||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20511792 tgtaacatttgtgttttttaatcttttatcatgagtacatgatttttatacaattgtgttagattttgctaaaataaaatacaactgtg 20511880  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 36197225 - 36197316
Alignment:
Q  165 tgtaacatttgtgtttttaatcttttatcatgactacatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtgctacg 257  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||    
T  36197225 tgtaacatttgtgtttttaatcttttatcatgactacaggattttta-ataattgtgttagattttgctaaaataaaatacaactgtgctacg 36197316  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 20511953 - 20512020
Alignment:
Q  184 atcttttatcatgactacatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtgctacg 257  Q
    ||||||||||||||||||||||| |||||||       ||||||||||||||||||||||||||||||||||||    
T  20511953 atcttttatcatgactacatgatttttatact------ttagattttgctaaaataaaatacaactgtgctacg 20512020  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 20511628 - 20511677
Alignment:
Q  1 aattaaaaataacacattagttattgtaataaatgtcatgccttaaaaaa 50  Q
    ||||||||||||||||||| |||||||||||||   |||||| |||||||    
T  20511628 aattaaaaataacacattaattattgtaataaacaccatgccgtaaaaaa 20511677  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 20511729 - 20511766
Alignment:
Q  72 tataatttatactttacatttaaacgaatataaccttt 109  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  20511729 tataatttatactgtacatttaaacgaatatagccttt 20511766  T

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Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 13761976 - 13762234
Alignment:
Q  1 aattaaaaataacacattagttattgtaataaatgtcatgccttaaaaaagtctcgttagatttaaacgaatataatttatactttacatttaaacgaat 100  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  13761976 aattaaaaataacacattaattattgtaataaatatcatgccttaaaaaagtctcgttagatttaaacgaatataatttatattgtacatttaaacgaat 13762075  T
Q  101 ataaccttttgtaac---caaaaaaacgaatataacctttggttnnnnnnnnnnnttgcatcatacttgtaacatttgtgtttttaatcttttatcatga 197  Q
    |||||||||||||||    |||||||||||||||||||||||||           ||| ||||||| |||||||||||||||||||||||||||||||||    
T  13762076 ataaccttttgtaacaaaaaaaaaaacgaatataacctttggtt-aaaaaaaaaattgaatcatacatgtaacatttgtgtttttaatcttttatcatga 13762174  T
Q  198 ctacatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtgctacg 257  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13762175 ctacatgatttttatacaattgtgttagattttgctaaaataaaatacaactgtgctacg 13762234  T

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Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 24020106 - 24020373
Alignment:
Q  1 aattaaaaataacacattagttattgtaataaatgtcatgccttaaaaaagtctcgttagatttaaacgaatataatttatactttacatttaaacgaat 100  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  24020106 aattaaaaataacacattaattattgtaataaataccatgccttaaaaaagtctcgttagatttaaacgaatataatttataccgtacatttaaacgaat 24020205  T
Q  101 ataaccttttgtaac------caaaaaaacgaatataacctttggttnnnnnnnnnnnttgcatcatacttgtaacatttgtgtttttaatcttttatca 194  Q
    |||||||||||||||       |||||||||||||||||||||||||           ||||||||||| ||||||||||||||||||||||||||||||    
T  24020206 ataaccttttgtaacaaaaaaaaaaaaaacgaatataacctttggtt--aaattttttttgcatcatacatgtaacatttgtgtttttaatcttttatca 24020303  T
Q  195 tgactacatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtgctacgcgtatat 264  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  24020304 tgactacatgatttttatacaattgtgttagcttttgctaaaataaaatacaactgtgctacgtgtatat 24020373  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 25071694 - 25071786
Alignment:
Q  165 tgtaacatttgtgtttttaatcttttatcatgactacatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtgctacg 257  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  25071694 tgtaacatttgtgtttttaatcttttatcatgactacagaatttttatacaattgtgttagattttgctaaaataaaacacaacagtgctacg 25071786  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 25071579 - 25071667
Alignment:
Q  21 ttattgtaataaatgtcatgccttaaaaaagtctcgttagatttaaacgaatataatttatactttacatttaaacgaatataaccttt 109  Q
    ||||||||||||||  |||  ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  25071579 ttattgtaataaataccataacttaaaaaagtcttgttagatttaaacgaatataatttatactctacatttaaaagaatataaccttt 25071667  T

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Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 39677585 - 39677840
Alignment:
Q  1 aattaaaaataacacattagttattgtaataaatgtcatgccttaaaaaagtctcgttagatttaaacgaatataatttatactttacatttaaacgaat 100  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  39677585 aattaaaaataacacattaattattgtaataaataccatgccttaaaaaagtctcgttagatttaaacgaatataatttatactgtacatttaaacaaac 39677684  T
Q  101 ataaccttttgtaacc-aaaaaaacgaatataacctttggttnnnnnnnnnnnttgcatcatacttgtaacatttgtgtttttaatcttttatcatgact 199  Q
    |||||||||||||||| |||||||||||||||||||||||||           ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  39677685 ataaccttttgtaaccaaaaaaaacgaatataacctttggtt--aaaaaaaatttgcatcatacatgtaacatttgtgtttttaatctttcatcatgact 39677782  T
Q  200 acatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtgctacg 257  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39677783 acatgatttttatacaattgtgttagattttgttaaaataaaatacaactgtgctacg 39677840  T

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Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 22756651 - 22756911
Alignment:
Q  1 aattaaaaataacacattagttattgtaataaatgtcatgccttaaaaaagtctcgttagatttaaacgaatataatttatactttacatttaaacgaat 100  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  22756651 aattaaaaataacacattaattattgtaataaataccatgccttaaaaaagtctcgttagatttaaacgaatataatttataccgtacatttaaacgaat 22756750  T
Q  101 ataaccttttgtaaccaaaaaaacgaatataacctttggtt------nnnnnnnnnnnttgcatcatacttgtaacatttgtgtttttaatcttttatca 194  Q
    ||||||||||||||||||||||||||||||||||| |||||                 ||||||||||| ||||||||||||||||||||||||||||||    
T  22756751 ataaccttttgtaaccaaaaaaacgaatataacctgtggttaaaaaaaaaaaaaaaaattgcatcatacatgtaacatttgtgtttttaatcttttatca 22756850  T
Q  195 tgactacatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtgcta 255  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  22756851 tgactacatgatttttatacaattgtgtttgattttgctaaaataaaatacaactgtgcta 22756911  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 16474982 - 16475069
Alignment:
Q  21 ttattgtaataaatgtcatgccttaaaaaagtctcgttagatttaaacgaatataatttatactttacatttaaacgaatataaccttt 109  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  16474982 ttattgtaataaataccatgccttaaaaaagtctc-ttagatttaaatgaatataatttatactgtacatttaaaagaatataaccttt 16475069  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 16475097 - 16475181
Alignment:
Q  165 tgtaacatttgtgtttttaatcttttatcatgactacatgatatttatacaattgtgttagattttgctaaaataaaatacaactgtgctacg 257  Q
    ||||||||||||||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  16475097 tgtaacatttgtgtttttaatcttttatcatgatt--------tttatacaattgtgttagattttgctaaaataaaatacaacagtgatacg 16475181  T

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