View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_low_35 (Length: 256)
Name: NF13218_low_35
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 4749161 - 4748934
Alignment:
| Q |
11 |
tcgaagaaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaacttt |
110 |
Q |
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| T |
4749161 |
tcgaagcaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaacttt |
4749062 |
T |
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| Q |
111 |
ttggtctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaatt |
210 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749061 |
ttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaatt |
4748962 |
T |
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| Q |
211 |
cgtgaccatttattggagacgtggttac |
238 |
Q |
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| T |
4748961 |
cgtgaccatttattggagacgtggttac |
4748934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 4756992 - 4756810
Alignment:
| Q |
18 |
aaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttggtct |
117 |
Q |
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|||||||||||||||| ||||||||| ||||||| | || ||||||||||| |||| ||| | | ||||||||| ||||||| |||||| | ||| |
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| T |
4756992 |
aaatcaatgtacaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatct |
4756893 |
T |
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| Q |
118 |
ctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataa |
200 |
Q |
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| T |
4756892 |
ctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagactaatataa |
4756810 |
T |
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