View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_low_37 (Length: 248)
Name: NF13218_low_37
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 41405242 - 41405104
Alignment:
| Q |
20 |
ctacaaccaacaactgaagtgttgatattaggtagcttccagtaagcatcaacgataactctcggaacacaacatgagcatgagctacaatagaagaagc |
119 |
Q |
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| T |
41405242 |
ctacaaccaacaaatgaagtgttgatattaggtagcttccggtaagcatcaacgataactctcggaacacaacatgagcatgagctacaatagaagaagc |
41405143 |
T |
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| Q |
120 |
gtgcatgtaatgtatgatgttctaaagaatcctaaacca |
158 |
Q |
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| T |
41405142 |
gtgcatgtaatgtatgatgttctaaagaatcctaaacca |
41405104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 41405071 - 41405003
Alignment:
| Q |
160 |
catgcacgaagtgattacgccatggccaactaaactgacacattgtatcccaaatagcaagtcatgtgt |
228 |
Q |
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| T |
41405071 |
catgcacgaagtgattacgccatggccaactaaactgacacattgtatcccaaatagaaagtcatgtgt |
41405003 |
T |
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