View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_low_39 (Length: 228)
Name: NF13218_low_39
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 33092731 - 33092925
Alignment:
| Q |
18 |
ctaacctccctcgacttctctcgcttccgcggcgacgacctcaactcgcttctctgtcgtgactcctgttcttgttccctctcctacctgacttccctca |
117 |
Q |
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| T |
33092731 |
ctaacctccctcgacttctctcgcttccgcggcgacgacctcaactcgcttctctgtcgtgactcctgttcttgttccctctcctacctgacttccctca |
33092830 |
T |
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| Q |
118 |
acctctccaaccaccccacgttccctgctttagggttggaaaaacttgtcaaaaagactcaattatccttgacctctctcacttgttctaatctc |
212 |
Q |
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| T |
33092831 |
acctctccaaccaccccacgttccctgctttagggttggaaaaacttgtcaaaaagactcaattatccttgacctctctcacttgttctaatctc |
33092925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 33713758 - 33713805
Alignment:
| Q |
108 |
acttccctcaacctctccaaccaccccacgttccctgctttagggttg |
155 |
Q |
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| T |
33713758 |
acttccctcaacctctccaaccaccccaccttccctgagttagggttg |
33713805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 33397678 - 33397587
Alignment:
| Q |
114 |
ctcaacctctccaaccaccccacgttccctgctttagggttggaaaaacttgtcaaaaagactcaattatccttgacctctctcacttgttc |
205 |
Q |
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| T |
33397678 |
ctcaacctctcaaaccaccccactttccccacgttaggattgcaaactattctcaaaaacactaaatcaaccttgacctctctcacttgttc |
33397587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 33707924 - 33707971
Alignment:
| Q |
108 |
acttccctcaacctctccaaccaccccacgttccctgctttagggttg |
155 |
Q |
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| T |
33707924 |
acttccctcaacctctccaaccaccccaccttccccgagttagggttg |
33707971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 27004677 - 27004742
Alignment:
| Q |
111 |
tccctcaacctctccaaccaccccacgttccctgctttagggttggaaaaacttgtcaaaaagact |
176 |
Q |
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| T |
27004677 |
tccctcaacctctccaaccacaccaccttccccgtcttagggttgcaaactcttctcaaaaagact |
27004742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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