View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_low_4 (Length: 653)
Name: NF13218_low_4
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 23 - 638
Target Start/End: Original strand, 6571409 - 6572024
Alignment:
| Q |
23 |
atgcatttatttatacctgtccaggtcgtacagaagatggcgaagacccagcttgtgcaggcttatcagcagaatttggtactccaagaatgctaagatc |
122 |
Q |
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| T |
6571409 |
atgcatttatttatacctgtccaggtcgtacagaagatggcgaagacccagcttgtgcaggcttatcagcagaatttggtactccaagaatgctaagatc |
6571508 |
T |
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| Q |
123 |
gagaggttgggtagatgcttgcagctgtgatgggggaattcctgcagcctgatccgaggattgaggtggcaaaccaccatccggaagtcctatgtgctca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6571509 |
gagaggttgggtagatgcttgcagctgtgatgggggaattcctgcagcctgatccgaggattgaggtggcaaaccaccatccggaagtcctatgtgctca |
6571608 |
T |
|
| Q |
223 |
tttgaaactacaacagatttaggttgaacatcacctacaccagcttcagaagtattaaactggttagccgtttccttgctgctttcaacccctggagtaa |
322 |
Q |
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| T |
6571609 |
tttgaaactacaacagatttaggttgaacatcacctacatcagcttcagaagtattaaactggttagccgtttccttgctgctttcaacccctggagtaa |
6571708 |
T |
|
| Q |
323 |
gtttagagagatacgacccagcaggacgcagtgtcgcagcaacctgaagggatgaaactgtattctgaaagaaatcttctggaataggtcctctacccac |
422 |
Q |
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| T |
6571709 |
gtttagagagatacgacccagcaggacgcagtgtagcagcaacctgaagggatgaaactgtattctgaaagaaatcttctggaataggtcctctacccac |
6571808 |
T |
|
| Q |
423 |
agccccagttattggctgtgaacttgattctgggcgagtaagagtctctgtaccaaacacgtcaccaggagttgaaactgtacgagcagccattcctgtt |
522 |
Q |
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| T |
6571809 |
agccccagttattggctgtgaacttgattctgggcgagtaagagtctctgtaccaaacacgtcaccaggagttgaaactgtacgagcagccattcctgtt |
6571908 |
T |
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| Q |
523 |
gttacaggaggcagggccaaaaactggccaaaatcttgtggtccaccggttaacgacctgctccttgatggagttaaccctccggtaagtttaaatttac |
622 |
Q |
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| T |
6571909 |
gttacaggaggcagggccaaaaactggccaaaatcttgtggtccactggttaacgacctgctccttgatggagttaaccctccggcaagtttaaatttac |
6572008 |
T |
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| Q |
623 |
tagccgcttctttaat |
638 |
Q |
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| T |
6572009 |
tagccgcttctttaat |
6572024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 34251166 - 34251096
Alignment:
| Q |
340 |
ccagcaggacgcagtgtcgcagcaacctgaagggatgaaactgtattctgaaagaaatcttctggaatagg |
410 |
Q |
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| T |
34251166 |
ccagcaggaggcagtgatgcagcaacgtgaacagaagaaattgtattctgaaagaaatcctctggaatagg |
34251096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 553
Target Start/End: Complemental strand, 34251025 - 34250941
Alignment:
| Q |
469 |
tctgtaccaaacacgtcaccaggagttgaaactgtacgagcagccattcctgttgttacaggaggcagggccaaaaactggccaa |
553 |
Q |
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||||||||||| | |||| ||||||||||||| ||| || || |||||||| ||||| || ||||||| ||||| |||||||| |
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| T |
34251025 |
tctgtaccaaaaaggtcaacaggagttgaaacagtagcagtaggaattcctgtagttactggtggcagggacaaaatctggccaa |
34250941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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