View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13218_low_42 (Length: 220)

Name: NF13218_low_42
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13218_low_42
NF13218_low_42
[»] chr8 (3 HSPs)
chr8 (7-101)||(11825605-11825700)
chr8 (1-156)||(23093413-23093586)
chr8 (123-156)||(11825563-11825596)
[»] chr7 (1 HSPs)
chr7 (1-73)||(47348568-47348640)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 11825700 - 11825605
Alignment:
Q  7 gaacgggagttacttgaagattacccacttttgcagcctttgtaaattgtaatggcatgcttgtttttatgtcatc-taagttagttcaaccacaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11825700 gaacgggagttacttgaagattacccacttttgcagcctttgtaaattgtaatggcatgcttgtttttatgtcatcttaagttagttcaaccacaa 11825605  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 23093586 - 23093413
Alignment:
Q  1 ctctcagaacgggagttacttgaagattacccacttttgcagcctttgtaaattgtaatggcatgcttg-------------------tttttatgtcat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||    
T  23093586 ctctcagaacgggagttacttgaagattacccacttttgcagcctttgtaaattgtaatggcatgcttgttttctgcttccgtgcttgtttttatgtcat 23093487  T
Q  82 ctaagttagttcaaccacaannnnnnnnctaacattactaattcaatcagtttaattttccgctatcggttatag 156  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||    
T  23093486 ctaagttagttcaaccacaa-attttttctaacattactaattcaatcagtttacttttccgctatcggttatag 23093413  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 11825596 - 11825563
Alignment:
Q  123 ttcaatcagtttaattttccgctatcggttatag 156  Q
    ||||||||||||| ||||||||||||||||||||    
T  11825596 ttcaatcagtttacttttccgctatcggttatag 11825563  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 47348568 - 47348640
Alignment:
Q  1 ctctcagaacgggagttacttgaagattacccacttttgcagcctttgtaaattgtaatggcatgcttgtttt 73  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  47348568 ctctcggaacgggagttacttgaagattacccacttttgcggcctttgtaaattgtaatggaatgcttgtttt 47348640  T

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