View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_low_5 (Length: 650)
Name: NF13218_low_5
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 363 - 632
Target Start/End: Original strand, 7090070 - 7090339
Alignment:
| Q |
363 |
gtgttgttggtactgatagtgaaattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
462 |
Q |
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| T |
7090070 |
gtgttgttggtactgatagtgatattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
7090169 |
T |
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| Q |
463 |
catgttgccaattccctctttcatctccttgagctcttttacaatactcttgaatggcattatgataagttgtgtatatatgtaggactagaaatctagc |
562 |
Q |
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| T |
7090170 |
catgttgccaattccctctttcatctccttgagctcttttacaatactcttgaatggcattatgataagttgtgtatatatgtaggactagaaatctagc |
7090269 |
T |
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| Q |
563 |
atagccattgtgtttgaaaagaagaaattaggcttcttgttttttatgaaagcatacaaaacaatataac |
632 |
Q |
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| T |
7090270 |
atagccattgtgtttgaaaagaagaaattaggcttcttgttttttatgaaagcatacaaaacaatataac |
7090339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 126 - 330
Target Start/End: Original strand, 7089827 - 7090031
Alignment:
| Q |
126 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
225 |
Q |
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| T |
7089827 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
7089926 |
T |
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| Q |
226 |
acaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattga |
325 |
Q |
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| T |
7089927 |
acaagctacaagtgcacggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattga |
7090026 |
T |
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| Q |
326 |
ctctg |
330 |
Q |
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| T |
7090027 |
ctctg |
7090031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 126 - 330
Target Start/End: Original strand, 7669653 - 7669857
Alignment:
| Q |
126 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
225 |
Q |
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| T |
7669653 |
ttacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggc |
7669752 |
T |
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| Q |
226 |
acaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattga |
325 |
Q |
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| T |
7669753 |
acaagctacaagtgcgcggagagatggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaagttagcccattga |
7669852 |
T |
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| Q |
326 |
ctctg |
330 |
Q |
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||||| |
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| T |
7669853 |
ctctg |
7669857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 363 - 632
Target Start/End: Original strand, 7669888 - 7670139
Alignment:
| Q |
363 |
gtgttgttggtactgatagtgaaattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
462 |
Q |
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||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||| |||| |
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| T |
7669888 |
gtgttgttggtgctgatagtgatattggtgaggaacattctggtgctatgtgagattttccatgtctatgtgtatgtttggtttctacatctcttatata |
7669987 |
T |
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| Q |
463 |
catgttgccaattccctctttcatctccttgagctcttttacaatactcttgaatggcattatgataagttgtgtatatatgtaggactagaaatctagc |
562 |
Q |
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|||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||| |||||| ||||||||||||||| |
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| T |
7669988 |
catgttgccaattccctctttcatctccttgatctctctcacaatactcttgaaaggcat------------------tatgtatgactagaaatctagc |
7670069 |
T |
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| Q |
563 |
atagccattgtgtttgaaaagaagaaattaggcttcttgttttttatgaaagcatacaaaacaatataac |
632 |
Q |
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| T |
7670070 |
atagccattgtgtttgaaaagaagaaattagacttcatgttttttatgaaagcatacaaaacaatataac |
7670139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 7089719 - 7089776
Alignment:
| Q |
13 |
aaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagctt |
70 |
Q |
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| T |
7089719 |
aaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagctt |
7089776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 7669549 - 7669606
Alignment:
| Q |
13 |
aaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagctt |
70 |
Q |
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| T |
7669549 |
aaaataaaagacaaagtaataacacatttagtaccatacaccatgtgcttccaagctt |
7669606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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