View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13218_low_7 (Length: 566)
Name: NF13218_low_7
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 7 - 557
Target Start/End: Complemental strand, 36788735 - 36788185
Alignment:
| Q |
7 |
agaaatgcaacccacaagacaagagggtgcttctcagaatcaagaaagaactcaacaacccttatcttctagcctcatgggacccacagacagattgctg |
106 |
Q |
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| T |
36788735 |
agaaatgcaacccacaagacaagagggtgcttctcaggatcaagaaagaactcaacaacccttatcttctagcctcatgggacccacagacagattgctg |
36788636 |
T |
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| Q |
107 |
tgactggtactgcgtcaaatgcgaccttataacacaccgtatcactgccctcattatgcaatcctccgtcccagacacaaatctctcaggccctataccc |
206 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36788635 |
tggctggtactgcgtcaaatgcgaccttataacacaccgtatcactgccctcattatgcaatcctccgtcccagacacaaatctctcaggcactataccc |
36788536 |
T |
|
| Q |
207 |
ccttcagtcggtgacctcccttatcttgaaaatctcgaattccacaaactccccaggctcacgggcccaatccagcccactatcgccaagctcacgaaac |
306 |
Q |
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| T |
36788535 |
ccttcagtcggtgacctcccttatcttgaaaatctcgaattccacaaactccccaggctcaagggcccaatccagcccactatcgccaagctcacgaaac |
36788436 |
T |
|
| Q |
307 |
tcaagtatcttttcattgaatacaccaatgtctcaggcccgataccacctttcttggcccagcataaaaacctccagcttcttcacctttccaccaacaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36788435 |
tcaagtatcttttcattgaatacaccaatgtctcaggcccgataccacctttcttggcccagcttaaaaacctccagcttcttcacctttccaccaacaa |
36788336 |
T |
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| Q |
407 |
cctctcatgcccgatcccaagctcactttcacagcttcctaaccttgagtccttacacttagacagaaacaaactcacaggcccaattccagaatcattc |
506 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36788335 |
cctctcaggcccgatcccaagctcactttcacagctacctaaccttgagtccttacacttagacagaaacaaactcacaggcccaattccagaatcattc |
36788236 |
T |
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| Q |
507 |
ggttctttcaaaaagcccgggccagatagcatcttatctcacaaccagctc |
557 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
36788235 |
ggttctttcaaaaagcctgggccagatatcatcttatctcacaaccagctc |
36788185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 36779957 - 36779896
Alignment:
| Q |
7 |
agaaatgcaacccacaagacaagagggtgcttctcagaatcaagaaagaactcaacaaccct |
68 |
Q |
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|||||||||||||||||||||||| | | | ||| ||||||||| ||||||||||||||| |
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| T |
36779957 |
agaaatgcaacccacaagacaagaaagcgttgctccaaatcaagaaggaactcaacaaccct |
36779896 |
T |
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