View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13218_low_9 (Length: 503)
Name: NF13218_low_9
Description: NF13218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13218_low_9 |
 | |
|
| [»] scaffold0807 (1 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 25)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 55505255 - 55505068
Alignment:
| Q |
13 |
tcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55505255 |
tcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgt |
55505156 |
T |
|
| Q |
113 |
atatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55505155 |
atatgacaagttcaacacctctagttgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattc |
55505068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 262 - 472
Target Start/End: Complemental strand, 21834276 - 21834066
Alignment:
| Q |
262 |
tcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattg |
361 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
21834276 |
tcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaaaagagagactttaattg |
21834177 |
T |
|
| Q |
362 |
aggctgtacaccaaattccatcgaagaatcagaattatgtacattcttacccccaatagattccattttgatctcactaagtgaatgacacttcctagca |
461 |
Q |
| |
|
||| | |||||||| |||| | |||| |||||||| | | |||||| ||||||| ||||||||||||||||||||| |||||||| ||| || || |
|
|
| T |
21834176 |
agggtacacaccaaaatccaccaaagattcagaattccctcgactcttactcccaatatgttccattttgatctcactaagcgaatgacagttcttaaca |
21834077 |
T |
|
| Q |
462 |
agtgcaaacaa |
472 |
Q |
| |
|
|||| |||||| |
|
|
| T |
21834076 |
agtgtaaacaa |
21834066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 532194 - 532307
Alignment:
| Q |
66 |
cgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaatta |
165 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || |
|
|
| T |
532194 |
cgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagta |
532293 |
T |
|
| Q |
166 |
ggttcactgttgaa |
179 |
Q |
| |
|
| |||||| ||||| |
|
|
| T |
532294 |
gattcactcttgaa |
532307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 53761876 - 53761685
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
|||||||| || ||||||||||| ||| ||||| | ||||| ||||| ||| || ||| |||||||||||||| ||||||||| ||| ||| ||||| |
|
|
| T |
53761876 |
tgcaaaagcccacgacaattcttcgagatcacaga--gtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagt |
53761779 |
T |
|
| Q |
154 |
tcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatat |
247 |
Q |
| |
|
||||||||||||| |||||| ||||||| | ||||| |||||||| |||||| |||||||| || |||||||||| | || |||||| ||||| |
|
|
| T |
53761778 |
tcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctttagatat |
53761685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 318
Target Start/End: Complemental strand, 55908820 - 55908567
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||||||| ||| ||| |||||| |||| ||||| ||||| ||||||||| |||||||||| | || ||| ||||||| |||| || ||| |
|
|
| T |
55908820 |
acaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagt |
55908721 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacct--ttc-gatatgttttggcaacttctca |
264 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |||| ||||||||| || ||| ||||| | || |||| ||| |||||||| ||||| |||| |
|
|
| T |
55908720 |
ttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctca |
55908621 |
T |
|
| Q |
265 |
aatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcat |
318 |
Q |
| |
|
||||||| | |||||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
55908620 |
aatcaagaaattgcaaattggggaaaatggaagcaaacaatatgatgttttcat |
55908567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 640901 - 640987
Alignment:
| Q |
47 |
taacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc |
133 |
Q |
| |
|
||||| ||||||||| || || ||||||||||||||||| || |||||| |||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
640901 |
taacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctc |
640987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 364
Target Start/End: Original strand, 547119 - 547219
Alignment:
| Q |
264 |
aaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgag |
363 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||| |||||| ||||||||||||| ||| |||||||| | |||||||| ||||||||| ||||||| |
|
|
| T |
547119 |
aaatcaagcagttgcaaattggggaacatggaaggaaacattttgatgctttcatctcttatgcatgaatttttagccaaatggagagacttcaattgag |
547218 |
T |
|
| Q |
364 |
g |
364 |
Q |
| |
|
| |
|
|
| T |
547219 |
g |
547219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 371135 - 371226
Alignment:
| Q |
273 |
agctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgagg |
364 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| || | | |||||| ||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
371135 |
agctgcaaattcaggaaaattgaagcaaacattataaggtattcatctcttaaccatgaattgtgagccaaatagagagattttaattgagg |
371226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 475
Target Start/End: Complemental strand, 53761582 - 53761464
Alignment:
| Q |
357 |
aattgaggctgtacaccaaattccatcgaagaatcagaattatgtacattcttacccccaatagattccattttgatctcactaagtgaatgacacttcc |
456 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| |||||||| | |||| ||| | ||| || ||||||||||||||||||||||||| |||| || |
|
|
| T |
53761582 |
aattgagggtatacaccaagctccatcgaagattcagaattctctacaatctcattccctattctttccattttgatctcactaagtgaaggacagtttt |
53761483 |
T |
|
| Q |
457 |
tagcaagtgcaaacaaggc |
475 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
53761482 |
tagcaagtgcaaacaaggc |
53761464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 364
Target Start/End: Original strand, 570737 - 570840
Alignment:
| Q |
264 |
aaatcaagcagctgcaaattagggaaaatggaagcaaac---ataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaatt |
360 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||| ||||| ||| |||||||| ||||||||| ||||| |||||| | |||||||| |||| |
|
|
| T |
570737 |
aaatcaagtagttgcaaattggggaaaatggaagcaaacattataataatgttttcatcacttaaccatgtattgtgagccaaggatagagacttcaatt |
570836 |
T |
|
| Q |
361 |
gagg |
364 |
Q |
| |
|
|||| |
|
|
| T |
570837 |
gagg |
570840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 310
Target Start/End: Original strand, 1600455 - 1600671
Alignment:
| Q |
97 |
catcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaa |
196 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || | | ||| |||||||||||| || |||| | ||||||| | ||||| |||||| |
|
|
| T |
1600455 |
catcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaa |
1600554 |
T |
|
| Q |
197 |
attcctaatcttacaacaactttttaaaacttggccaacacct--ttc-gatatgttttggcaacttctcaaatcaagcagctgcaaattagggaaaatg |
293 |
Q |
| |
|
|| ||||| ||| || | || |||||||||| | || |||| ||| |||||||| |||||| |||||||||||||| |||||||| || ||| || |
|
|
| T |
1600555 |
atgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattgggaaaattg |
1600654 |
T |
|
| Q |
294 |
gaagcaaacataatgat |
310 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
1600655 |
gaagcaaacattatgat |
1600671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 570551 - 570677
Alignment:
| Q |
264 |
aaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgag |
363 |
Q |
| |
|
|||||||| | ||||||||| |||||||| ||||||||||| | ||| |||||||| ||||||||| |||| || ||| | |||||||| |||||| |
|
|
| T |
570551 |
aaatcaagtatctgcaaattggggaaaatagaagcaaacattaaaatgttttcatcacttaaccatgtattgcgagtcaagaatagagacttcaattgat |
570650 |
T |
|
| Q |
364 |
gctgtacaccaaattccatcgaagaat |
390 |
Q |
| |
|
| | |||| |||||||||| ||||||| |
|
|
| T |
570651 |
ggtttacaacaaattccattgaagaat |
570677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 262 - 364
Target Start/End: Complemental strand, 1548321 - 1548219
Alignment:
| Q |
262 |
tcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattg |
361 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||| ||| || ||||| ||||||| |||| | |||||||| || |||| |||| ||||||||||| |
|
|
| T |
1548321 |
tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattg |
1548222 |
T |
|
| Q |
362 |
agg |
364 |
Q |
| |
|
||| |
|
|
| T |
1548221 |
agg |
1548219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 1513513 - 1513407
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
|||||||| || |||||| ||||||| | || || |||||| |||| ||||| |||||| |||||||||||||||| ||||| | ||| ||| ||||| |
|
|
| T |
1513513 |
tgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagt |
1513414 |
T |
|
| Q |
154 |
tcattcc |
160 |
Q |
| |
|
||||||| |
|
|
| T |
1513413 |
tcattcc |
1513407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 12121527 - 12121458
Alignment:
| Q |
90 |
agtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattc |
159 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||||| ||||| | ||| ||| ||||||||||| |
|
|
| T |
12121527 |
agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc |
12121458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 3438463 - 3438404
Alignment:
| Q |
260 |
tctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatc |
319 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| |||| |||||| | || ||||||||| |
|
|
| T |
3438463 |
tctcacatcaagcagctgcaaattggggaaaatagaagaaaacatcaagaggctttcatc |
3438404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 503
Target Start/End: Original strand, 641280 - 641362
Alignment:
| Q |
421 |
attccattttgatctcactaagtgaatgacacttcctagcaagtgcaaacaaggcagaatctgtgagcttaagacaatgacta |
503 |
Q |
| |
|
|||||||||| || ||| |||||||| |||| || | ||||||||||||||||| || | |||||||||| |||||||||| |
|
|
| T |
641280 |
attccattttaatatcattaagtgaaggacaatttccagcaagtgcaaacaaggttgattttgtgagcttaccacaatgacta |
641362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 1548537 - 1548451
Alignment:
| Q |
47 |
taacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc |
133 |
Q |
| |
|
|||||| |||||||| || | |||| |||||||| |||||| |||||| |||| |||| |||||| |||||||||||||||||| |
|
|
| T |
1548537 |
taacaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctc |
1548451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 12121353 - 12121251
Alignment:
| Q |
261 |
ctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaatt |
360 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||| | | ||||||||||||| | |||||||| | | | ||||| |||||||||||||| |
|
|
| T |
12121353 |
ctcaaatcaagcaattgcaaattggggaaaacggaagcaatccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatggagagactttaatt |
12121254 |
T |
|
| Q |
361 |
gag |
363 |
Q |
| |
|
||| |
|
|
| T |
12121253 |
gag |
12121251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 488
Target Start/End: Complemental strand, 55908457 - 55908391
Alignment:
| Q |
422 |
ttccattttgatctcactaagtgaatgacacttcctagcaagtgcaaacaaggcagaatctgtgagc |
488 |
Q |
| |
|
||||||||||| |||| |||||||| |||| |||||| | |||||||||| ||| || ||||||||| |
|
|
| T |
55908457 |
ttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagc |
55908391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Original strand, 547283 - 547336
Alignment:
| Q |
422 |
ttccattttgatctcactaagtgaatgacacttcctagcaagtgcaaacaaggc |
475 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||| | |||||||||||||| |
|
|
| T |
547283 |
ttccattttgatctcactaagtgaagcacaattactaacgagtgcaaacaaggc |
547336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 641115 - 641212
Alignment:
| Q |
261 |
ctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaa |
358 |
Q |
| |
|
||||||||||||| | | ||||| ||||| |||||||||||||| || ||| ||||||| ||| ||| |||| | |||||||| |||| ||||||| |
|
|
| T |
641115 |
ctcaaatcaagcaaccgtaaatttgggaacatggaagcaaacattattatgttttcatctcttagccaaaaattatgagccaaatggagacactttaa |
641212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 1519200 - 1519143
Alignment:
| Q |
102 |
tcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattc |
159 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| | ||| ||| ||||||||||| |
|
|
| T |
1519200 |
tcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc |
1519143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 1537819 - 1537766
Alignment:
| Q |
108 |
tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcca |
161 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||| ||| ||||||||||||| |
|
|
| T |
1537819 |
tttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcca |
1537766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 1489413 - 1489361
Alignment:
| Q |
108 |
tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcc |
160 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||| ||| |||||||||||| |
|
|
| T |
1489413 |
tttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc |
1489361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 56 - 487
Target Start/End: Complemental strand, 19468603 - 19468172
Alignment:
| Q |
56 |
caaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttc |
155 |
Q |
| |
|
||||||||| | ||| ||||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||||||||| |||| ||| ||| ||||||| |
|
|
| T |
19468603 |
caaaagtccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttc |
19468504 |
T |
|
| Q |
156 |
attccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggc |
255 |
Q |
| |
|
| ||||| ||| |||||| ||||||||| ||||| ||| |||| |||||| ||| |||| || |||||||||| | || |||| |||||||| | || |
|
|
| T |
19468503 |
actccaagtagattcactcttgaacagtgggctaagtttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtggttgc |
19468404 |
T |
|
| Q |
256 |
aacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactt |
355 |
Q |
| |
|
| |||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||| |||| |
|
|
| T |
19468403 |
atgagttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaaccatgaattctcagccaagtagagatactt |
19468304 |
T |
|
| Q |
356 |
taattgaggctgtacaccaaattccatcgaagaatcagaattatgtacattcttacccccaatagattccattttgatctcactaagtgaatgacacttc |
455 |
Q |
| |
|
||||||||| ||||||||| ||| | ||||||||||||| | |||| |||||| ||||||| ||||||||||||||||||||||||| |||| ||| |
|
|
| T |
19468303 |
taattgagggaatacaccaaaatccggcaaagaatcagaattctctacactcttactcccaatattttccattttgatctcactaagtgaaggacaattc |
19468204 |
T |
|
| Q |
456 |
ctagcaagtgcaaacaaggcagaatctgtgag |
487 |
Q |
| |
|
||| | |||| |||||||| |||| |||||| |
|
|
| T |
19468203 |
ctaacgagtgtaaacaaggttgaatatgtgag |
19468172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 43634859 - 43635033
Alignment:
| Q |
13 |
tcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgt |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43634859 |
tcactcccttctctgtgacatcactattattcagtaacaaattcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgt |
43634958 |
T |
|
| Q |
113 |
atatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggcta |
189 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
43634959 |
atatgacaagttcaacgcctctagctgggggactctaaaggtcattccaagt--gttcactattgaacagtaggcta |
43635033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 364
Target Start/End: Original strand, 9586631 - 9586942
Alignment:
| Q |
53 |
atgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaag |
152 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||| |||| | ||| | ||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
9586631 |
atgcaaaagtccacgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggggacttcaaaa |
9586730 |
T |
|
| Q |
153 |
ttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacc---tttcgatatgt |
249 |
Q |
| |
|
|| ||| ||| |||||| || | |||| | | || |||||||| ||||||| |||||| |||| ||||||||| | || ||| ||| ||||||| |
|
|
| T |
9586731 |
ttaatttcaagtaggtttacaggagaac---aagatatgttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgt |
9586827 |
T |
|
| Q |
250 |
tttggcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagag |
349 |
Q |
| |
|
| |||| | || |||||||||||||||||| |||||||| ||||||||||| |||||| ||| ||| |||||||| |||| | |||||| || |
|
|
| T |
9586828 |
tacagcaatggcacagatcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaatcaag |
9586927 |
T |
|
| Q |
350 |
agactttaattgagg |
364 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
9586928 |
agacttcaattgagg |
9586942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 56 - 364
Target Start/End: Original strand, 9581064 - 9581374
Alignment:
| Q |
56 |
caaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaac--ctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| ||| |||| | ||| |||||| |||||||||||||||||||||||| ||||| | ||| | |
|
|
| T |
9581064 |
caaaagtccacgacaattctttgagatcacataaagcgtttcatcattaacttttttgtacatgacaagttcaacacctctagcttggggagttcaaaat |
9581163 |
T |
|
| Q |
154 |
tcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacc---tttcgatatgtt |
250 |
Q |
| |
|
| ||| ||| ||| || || | |||| | | || |||||||| ||||||| |||||| |||||||||||||| | || ||| ||| |||||||| |
|
|
| T |
9581164 |
taatttcaagtagttttacaggagaac---aagatatgttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgtt |
9581260 |
T |
|
| Q |
251 |
ttggcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagaga |
350 |
Q |
| |
|
|||| | || |||||||||||||||||| |||||||| ||||||||||| |||||| ||| ||| |||| ||| ||||| | |||||| ||| |
|
|
| T |
9581261 |
acagcaatggcgcagatcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaacattgattgtgacccaaatcaaga |
9581360 |
T |
|
| Q |
351 |
gactttaattgagg |
364 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9581361 |
gactttaattgagg |
9581374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 54 - 497
Target Start/End: Complemental strand, 51764546 - 51764103
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
|||||||| || | ||||||||||||| || |||| |||||| ||| ||||| |||||| ||||||||| |||||||| |||| || ||| ||||| |
|
|
| T |
51764546 |
tgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagt |
51764447 |
T |
|
| Q |
154 |
tcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttg |
253 |
Q |
| |
|
||||||||| ||| |||||| ||||||| | || ||||||||||| |||||||||| |||| || ||||||||| | |||||||| |||||| | |
|
|
| T |
51764446 |
tcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaacttcacagacacctttagatatgcgatt |
51764347 |
T |
|
| Q |
254 |
gcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagac |
353 |
Q |
| |
|
|||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| ||| |||||||||| |
|
|
| T |
51764346 |
gcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaaccatgtattttcacccagatagagagac |
51764247 |
T |
|
| Q |
354 |
tttaattgaggctgtacaccaaattccatcgaagaatcagaattatgtacattcttacccccaatagattccattttgatctcactaagtgaatgacact |
453 |
Q |
| |
|
||||||||||| | ||||||||| |||| | ||||||||||||| | |||| | |||||| ||||||||||||||||| ||||||| |||| | |
|
|
| T |
51764246 |
tttaattgagggtatacaccaaagtccaccaaagaatcagaattctctacacaatccgtcccaatgttttccattttgatctcaccaagtgaaggacaat |
51764147 |
T |
|
| Q |
454 |
tcctagcaagtgcaaacaaggcagaatctgtgagcttaagacaa |
497 |
Q |
| |
|
||||||||| | || |||||| || | ||||||||| ||||| |
|
|
| T |
51764146 |
acctagcaagagtaagcaaggctgatttggtgagcttaggacaa |
51764103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 54 - 375
Target Start/End: Complemental strand, 13470838 - 13470517
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
|||||||| || | ||||||||||||| ||| ||| |||||| ||| | ||||||||||| |||||||||||||||||| || | ||| || ||||| |
|
|
| T |
13470838 |
tgcaaaagcccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagt |
13470739 |
T |
|
| Q |
154 |
tcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttg |
253 |
Q |
| |
|
||||||||| ||| |||||| || ||| ||||||| |||||||| ||||||||||||||| | |||||||||| | || |||||| |||| | | |
|
|
| T |
13470738 |
tcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttttgataagagatt |
13470639 |
T |
|
| Q |
254 |
gcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagac |
353 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||| |||||||| ||| | |||||||||||||| |
|
|
| T |
13470638 |
gcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatgatgccttcatcacttaaccattgattttttcccaaatagagagac |
13470539 |
T |
|
| Q |
354 |
tttaattgaggctgtacaccaa |
375 |
Q |
| |
|
||||||||||| | |||||||| |
|
|
| T |
13470538 |
tttaattgagggtatacaccaa |
13470517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 51113931 - 51113580
Alignment:
| Q |
13 |
tcactcccttctctgtgacatcg---ctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctt |
109 |
Q |
| |
|
||||||||||||||||||||| | | |||||||| ||||| |||||||| || | |||| |||| ||| ||||||| |||||| |||| |||||| | |
|
|
| T |
51113931 |
tcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccat |
51113832 |
T |
|
| Q |
110 |
tgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatctta |
209 |
Q |
| |
|
||||| |||||||| |||||||| || | ||| || |||||||||||||| ||| |||| | |||||||||| |||| ||||||| |||||| ||| |
|
|
| T |
51113831 |
tgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaatttta |
51113732 |
T |
|
| Q |
210 |
caacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatga |
309 |
Q |
| |
|
||||| || ||||||||||| | || ||||| ||||| | | |||| | |||||||| ||||||| ||| |||||||||||||||| ||| |||| |
|
|
| T |
51113731 |
caacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaatcaagaagctgcagattggggaaaatggaagcaatcattatga |
51113632 |
T |
|
| Q |
310 |
tgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattg |
361 |
Q |
| |
|
|||| ||||| ||||||||| ||||| | |||| | ||||||||||||||| |
|
|
| T |
51113631 |
tgctctcatctcttaaccatggattgtgatccaactggagagactttaattg |
51113580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 514624 - 514521
Alignment:
| Q |
261 |
ctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaatt |
360 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||| || | | ||||||| |||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
514624 |
ctcaaatcaattagctgcaaattcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaatt |
514525 |
T |
|
| Q |
361 |
gagg |
364 |
Q |
| |
|
|||| |
|
|
| T |
514524 |
gagg |
514521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 514454 - 514405
Alignment:
| Q |
425 |
cattttgatctcactaagtgaatgacacttcctagcaagtgcaaacaagg |
474 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| || ||||||||||||||| |
|
|
| T |
514454 |
cattttgatctcactaagtgaaggacagttcttaacaagtgcaaacaagg |
514405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 51121004 - 51120920
Alignment:
| Q |
49 |
acaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc |
133 |
Q |
| |
|
|||| |||||||| || |||||| |||||||| | ||||| ||| || |||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
51121004 |
acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc |
51120920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 68 - 491
Target Start/End: Complemental strand, 6589415 - 6588995
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
|||||| |||||| ||| ||| |||||| ||| | ||| ||||||| |||||||||||||||||| ||| ||| ||| |||||||||||||| ||| |
|
|
| T |
6589415 |
acaattttttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagc |
6589316 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaat |
267 |
Q |
| |
|
|||||| | |||| |||||| |||||||| ||||||||||||||| ||| | || ||||| | || |||||| |||||||| | ||| | |||| |
|
|
| T |
6589315 |
ttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatatgttattacaagaattgaaat |
6589216 |
T |
|
| Q |
268 |
caagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgaggctg |
367 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| ||||| || ||||| ||||||||||||| | | ||||||||||||||||||||||||| || |
|
|
| T |
6589215 |
caagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgaggatg |
6589116 |
T |
|
| Q |
368 |
tacaccaaattccatcgaagaatcagaattatgtacattcttacccccaatagattccattttgatctcactaagtgaatgacacttcctagcaagtgca |
467 |
Q |
| |
|
||||||| | || ||| ||| |||| |||| |||||| |||| ||||||| ||||||||| |||| || |||||||||||||||||||| |
|
|
| T |
6589115 |
aacaccaatatatgccggagattcataatttgctaca---ctacccctaatattttccattgtgatctcaccaagtaaaggacacttcctagcaagtgca |
6589019 |
T |
|
| Q |
468 |
aacaaggcagaatctgtgagctta |
491 |
Q |
| |
|
||||| || || ||||||| |||| |
|
|
| T |
6589018 |
aacaaagctgattctgtgatctta |
6588995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 54 - 374
Target Start/End: Original strand, 6394857 - 6395177
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
|||||||| || | ||||||||||||| ||||| |||| ||| |||| ||||| |||||| |||||||||||||||||| |||| ||| ||| ||||| |
|
|
| T |
6394857 |
tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagt |
6394956 |
T |
|
| Q |
154 |
tcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttg |
253 |
Q |
| |
|
|||||||| ||| |||||| |||||||| | |||| |||||||| ||| ||||||||| | ||||||||||| | || ||||| ||||| | | |
|
|
| T |
6394957 |
tcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtga |
6395056 |
T |
|
| Q |
254 |
gcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagac |
353 |
Q |
| |
|
||||| | |||||||||| ||||| ||||| ||||||||||||| |||||| ||||| ||||||| ||||||| |||| | ||||||||||||| |
|
|
| T |
6395057 |
gcaacgtgtcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatgattatttcatctattaaccagtaatttgtacccaaatagagagag |
6395156 |
T |
|
| Q |
354 |
tttaattgaggctgtacacca |
374 |
Q |
| |
|
||||| ||||| | ||||||| |
|
|
| T |
6395157 |
tttaactgagggtatacacca |
6395177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 68 - 376
Target Start/End: Original strand, 6410013 - 6410321
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||| ||||| |||||| |||| |||||||||||| |||| ||| ||| ||||||||||||| ||| |
|
|
| T |
6410013 |
acaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagc |
6410112 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaat |
267 |
Q |
| |
|
|||||| || || ||||||| || ||||| | ||| ||||||||| | | ||||||||| | || ||||| ||||| | ||||||| |||||| |
|
|
| T |
6410113 |
ttcacttttttgcaataggctaagtccaaatgcttaagcttacaacatttctgtaaaacttgacaaataccttcagatatttgctggcaacccgtcaaat |
6410212 |
T |
|
| Q |
268 |
caagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgaggctg |
367 |
Q |
| |
|
|||| || || ||||| || |||||||||||||||| |||||| |||||||| ||||| ||| ||||| | ||||||||||||||||||||||||| | |
|
|
| T |
6410213 |
caagtagttgtaaattgggaaaaatggaagcaaacaaaatgattatttcatcacttaacgatgtattgtaatccaaatagagagactttaattgagggta |
6410312 |
T |
|
| Q |
368 |
tacaccaaa |
376 |
Q |
| |
|
||||||||| |
|
|
| T |
6410313 |
tacaccaaa |
6410321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 54 - 376
Target Start/End: Original strand, 6415959 - 6416281
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
|||||||| || | ||||||||||||| ||||||| || ||| ||| | ||||||||||| |||||||||||||||||| || | ||| ||| ||||| |
|
|
| T |
6415959 |
tgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagt |
6416058 |
T |
|
| Q |
154 |
tcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttg |
253 |
Q |
| |
|
||||||| ||| |||||| || ||| |||||| |||||||| || |||||||||||| | ||||||||||| | || ||||| |||| | | |
|
|
| T |
6416059 |
ccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacatatctttaaaacttgacaaataccttcagataagagatt |
6416158 |
T |
|
| Q |
254 |
gcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagac |
353 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |||||| |||||| ||||| | |||||| |||||||| ||| | |||||||||||||| |
|
|
| T |
6416159 |
acaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccatttattttttcccaaatagagagac |
6416258 |
T |
|
| Q |
354 |
tttaattgaggctgtacaccaaa |
376 |
Q |
| |
|
||||||||||| | ||||||||| |
|
|
| T |
6416259 |
tttaattgagggtatacaccaaa |
6416281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 68 - 364
Target Start/End: Original strand, 6432168 - 6432464
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
|||||||||| || |||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||| ||| ||| ||||||||||||| ||| |
|
|
| T |
6432168 |
acaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagc |
6432267 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaat |
267 |
Q |
| |
|
|||||| || ||| ||||||| |||||||| ||| |||||||| || |||||||||| | || ||||| ||| || || | | ||||| |
|
|
| T |
6432268 |
ttcacttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttcatttatacgatgacaccaacgcaaat |
6432367 |
T |
|
| Q |
268 |
caagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgagg |
364 |
Q |
| |
|
|||| | |||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
6432368 |
caagatgttgcaaattggggaaaatggaagcaaacattatgatcctttcattccttaaccatgaattgtgacccaaatagagagactttaactgagg |
6432464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 68 - 364
Target Start/End: Original strand, 7119164 - 7119460
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||| ||| |||||| |||||| |||| |||||||| |||| |||||||||||||||||| |||||| | || |||||||||||||| ||| |
|
|
| T |
7119164 |
acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagc |
7119263 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaat |
267 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||| |||||||| |||| || |||||||||| | || ||||| |||||||| | |||| | |||||| |
|
|
| T |
7119264 |
ttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaat |
7119363 |
T |
|
| Q |
268 |
caagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgagg |
364 |
Q |
| |
|
|||| || || ||||| ||||||| |||||| || || | || |||||||| |||||| | |||| | | ||||||||||||||||| ||||| |
|
|
| T |
7119364 |
caagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgagg |
7119460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 68 - 364
Target Start/End: Original strand, 7131642 - 7131938
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||| ||| |||||| |||||| |||| |||||||| |||| |||||||||||||||||| |||||| | || |||||||||||||| ||| |
|
|
| T |
7131642 |
acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagc |
7131741 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaat |
267 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||| |||||||| |||| || |||||||||| | || ||||| |||||||| | |||| | |||||| |
|
|
| T |
7131742 |
ttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaat |
7131841 |
T |
|
| Q |
268 |
caagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgagg |
364 |
Q |
| |
|
|||| || || ||||| ||||||| |||||| || || | || |||||||| |||||| | |||| | | ||||||||||||||||| ||||| |
|
|
| T |
7131842 |
caagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgagg |
7131938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 364
Target Start/End: Complemental strand, 10579828 - 10579532
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||||||| || ||| |||||| ||| ||||| |||||||||||||||||||||||||| |||||||| | | || || |||| || | | |
|
|
| T |
10579828 |
acaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgc |
10579729 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaat |
267 |
Q |
| |
|
|||||| ||| ||| | ||||| |||||||| | ||||||||| ||| ||| | ||||||| || ||||| ||||||| || |||| | |||||| |
|
|
| T |
10579728 |
ttcactcttggacatttggctaagttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaat |
10579629 |
T |
|
| Q |
268 |
caagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgagg |
364 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||| || || |||||||| |||| ||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
10579628 |
caagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacaatgaatttctacccaaatagagagattttaattgagg |
10579532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 68 - 334
Target Start/End: Original strand, 6402867 - 6403133
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||| |||||||| |||| ||||||||||||||| ||||| ||||| ||| |||||| ||||||| ||| |
|
|
| T |
6402867 |
acaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagc |
6402966 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaat |
267 |
Q |
| |
|
|||||| ||||||| | || |||||||| |||||| |||||||| || |||||||||| | || ||||| ||||| | ||| | | ||| | |
|
|
| T |
6402967 |
ttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttcagatatacgatcgcaccaacgcaatt |
6403066 |
T |
|
| Q |
268 |
caagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaatt |
334 |
Q |
| |
|
|||| | |||||| | || |||||||||||||| | ||||||||||||||| | ||||||||||| |
|
|
| T |
6403067 |
caagatgttgcaaactgggaaaaatggaagcaaaacttatgatgctttcatcactcaaccatgaatt |
6403133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 262 - 364
Target Start/End: Original strand, 6423418 - 6423520
Alignment:
| Q |
262 |
tcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattg |
361 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| ||| | |||||||||||||||||||||| |
|
|
| T |
6423418 |
tcaaatcaagtagttttaaattagggaaaatggaagcaaacattatgatgatttcatcacttaaccacgaagtgtaacccaaatagagagactttaattg |
6423517 |
T |
|
| Q |
362 |
agg |
364 |
Q |
| |
|
||| |
|
|
| T |
6423518 |
agg |
6423520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 68 - 374
Target Start/End: Original strand, 6426518 - 6426824
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||||||| || |||||| ||| |||| |||| |||| | |||||| ||||||||||| |||| ||| ||| ||||||||||||| ||| |
|
|
| T |
6426518 |
acaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagt |
6426617 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaat |
267 |
Q |
| |
|
||||| |||||||| | |||| |||||||| ||| ||||||||| | ||||||||| | || ||||| ||||| | ||||| |||||| |
|
|
| T |
6426618 |
ttcacgtttgaacagaaagctaagttcaaatgtttaagcttacaacatttccttaaaacttcacaaataccttcagatatttcacggcaaaccttcaaat |
6426717 |
T |
|
| Q |
268 |
caagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgaggctg |
367 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||| |||| |||||| |||||||| ||||||||||||| | ||| |||||||||||| |||||||| | |
|
|
| T |
6426718 |
caagtagctgtaaattggggaaaatggaagcatacattatgatgatttcatcacttaaccatgaatttctacccagatagagagacttcaattgagggta |
6426817 |
T |
|
| Q |
368 |
tacacca |
374 |
Q |
| |
|
||||||| |
|
|
| T |
6426818 |
tacacca |
6426824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 14820893 - 14821003
Alignment:
| Q |
264 |
aaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgag |
363 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
14820893 |
aaatcaagtagctttaaatttgggaaaatggaagcatacaaaatgattatttcatcatttaaccatgaattgtgacccaaatagagagacttcaattgag |
14820992 |
T |
|
| Q |
364 |
gctgtacacca |
374 |
Q |
| |
|
| | ||||||| |
|
|
| T |
14820993 |
ggtatacacca |
14821003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 375
Target Start/End: Original strand, 19632388 - 19632750
Alignment:
| Q |
13 |
tcactcccttctctgtgacat---cgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctt |
109 |
Q |
| |
|
|||||||||||||||||| || | | |||||||| ||| | |||||||| || | ||||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
19632388 |
tcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaaaaagttgctcatcatcaacctt |
19632487 |
T |
|
| Q |
110 |
tgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatctta |
209 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||| ||| |||||| ||||||| |||||| ||| ||||||| | || |||||||| | | |||||| |
|
|
| T |
19632488 |
tgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttcaaatgcgttatctta |
19632587 |
T |
|
| Q |
210 |
caacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatga |
309 |
Q |
| |
|
||||| | |||||||||| | || | | || ||||||| | ||||| ||||||||||| ||| |||||| || |||| ||||| ||||| | | |
|
|
| T |
19632588 |
caaca---tcttaaaacttgacaaatagcattagatatgtaatagcaacgattcaaatcaagccgctacaaattgggaaaaaacgaagcgaacattgtaa |
19632684 |
T |
|
| Q |
310 |
tgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgaggctgtacaccaa |
375 |
Q |
| |
|
| |||||||| |||||| | |||| | ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
19632685 |
tcttttcatcacttaaccgtaaatttcgacccaaatagagagactttaattgagggtatacaccaa |
19632750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 7994288 - 7994128
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |||||| | || | |||| |||||| ||||| ||||||||||||||||| || ||| ||||| |
|
|
| T |
7994288 |
tgcaaaagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagt |
7994189 |
T |
|
| Q |
154 |
tcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaaca |
214 |
Q |
| |
|
||||||| | ||| |||||| ||| ||| | ||||| |||||||| ||| ||||||||||| |
|
|
| T |
7994188 |
tcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaaca |
7994128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 8913881 - 8913783
Alignment:
| Q |
264 |
aaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattga |
362 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||| |||||| ||||||| ||||||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
8913881 |
aaatcaagcatatgcaaattggaaaaaatggaagcaaacattatgatgatttcatccgttaaccacaaattgtcacccaaataaagagactttaattga |
8913783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 6585329 - 6585216
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
|||| |||||||| ||||||| |||||| |||| ||||||||||||| |||||||||||| ||||| | ||||| ||| |||||| ||||||| ||| |
|
|
| T |
6585329 |
acaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagc |
6585230 |
T |
|
| Q |
168 |
ttcactgttgaaca |
181 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
6585229 |
ttcactcttgaaca |
6585216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 14820642 - 14820793
Alignment:
| Q |
13 |
tcactcccttctctgtgacatcgcta--tttttcaa-taacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctt |
109 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||| ||| || ||||||| || | ||||||||| ||| ||| |||||||||| ||| |||||||| |
|
|
| T |
14820642 |
tcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattcttggagatcatataaagtgtttcattatcaacctt |
14820741 |
T |
|
| Q |
110 |
tgtatatgacaagttcaacacctctagctgggggactctaaagttcattcca |
161 |
Q |
| |
|
||||| ||| |||||||||||||||| || ||| ||| |||||| |||||| |
|
|
| T |
14820742 |
tgtatttgataagttcaacacctctaacttgggaactgcaaagttaattcca |
14820793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 474
Target Start/End: Complemental strand, 6603103 - 6602885
Alignment:
| Q |
262 |
tcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattg |
361 |
Q |
| |
|
|||||||||| ||||||||| | |||| | ||||||||||| ||||| ||| | || |||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
6603103 |
tcaaatcaagtagctgcaaactggggatagaagaagcaaacattatgattttttgaacacttaaccataaattgtcacctaaatagagagactttaattg |
6603004 |
T |
|
| Q |
362 |
aggctgtacaccaaattccatcgaagaatcagaattatgtacattcttacccccaata------gattccattttgatctcactaagtgaatgacacttc |
455 |
Q |
| |
|
||| | || ||||| |||||| ||||||| ||| | |||||||| ||||||| ||||||||||||||||||||||||| |||| || |
|
|
| T |
6603003 |
agggtatataccaatatccatcatagaatcattattctctacattctctttcccaatatctgtgtcttccattttgatctcactaagtgaaggacagttt |
6602904 |
T |
|
| Q |
456 |
ctagcaagtgcaaacaagg |
474 |
Q |
| |
|
|| |||||| |||||||| |
|
|
| T |
6602903 |
ttaacaagtgaaaacaagg |
6602885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 9411555 - 9411596
Alignment:
| Q |
261 |
ctcaaatcaagcagctgcaaattagggaaaatggaagcaaac |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9411555 |
ctcaaatcaagcagctgcaaattggggaaaatggaagcaaac |
9411596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 9411348 - 9411432
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagct |
138 |
Q |
| |
|
||||||||||| ||||||||||||||| || |||| ||| || ||||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
9411348 |
tgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagct |
9411432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 319
Target Start/End: Complemental strand, 6594698 - 6594447
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| ||||||| ||||| |||||||| ||||||||| || | ||| ||| |||||| |||||| ||| |
|
|
| T |
6594698 |
acaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagc |
6594599 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttggcaacttctcaaat |
267 |
Q |
| |
|
|||||| ||||||| || || || ||||| |||||||| |||| || |||||||||| | || ||||| ||||| | | | || ||||||| |
|
|
| T |
6594598 |
ttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaacttgacaaataccttcagatatttgatcggaaaacctcaaat |
6594499 |
T |
|
| Q |
268 |
caagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatc |
319 |
Q |
| |
|
||||||||| |||| | |||||||| |||||||||| |||||| ||||||| |
|
|
| T |
6594498 |
caagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatc |
6594447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 14818389 - 14818456
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctcta |
135 |
Q |
| |
|
||||||||| ||| ||| |||||||||| ||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
14818389 |
acaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctcta |
14818456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 14802343 - 14802405
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacac |
130 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||| ||||||||||||| |||||| |||||||| |
|
|
| T |
14802343 |
acaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacac |
14802405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 6597020 - 6596946
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggg |
142 |
Q |
| |
|
||||||||||||| | | || |||||| |||| ||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
6597020 |
acaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctgggg |
6596946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 150 - 474
Target Start/End: Complemental strand, 10170140 - 10169816
Alignment:
| Q |
150 |
aagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgt |
249 |
Q |
| |
|
||||||| | ||| ||| |||||| ||||||||| ||||| || |||| |||||| ||| |||| || |||||||||| | || |||| |||||||| |
|
|
| T |
10170140 |
aagttcacttcaagtagattcactcttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgt |
10170041 |
T |
|
| Q |
250 |
tttggcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagag |
349 |
Q |
| |
|
| |||| ||||||||| ||||| ||||||||| |||||||||| |||||| |||||| |||||| ||| ||||| ||||| |||||||||||| |
|
|
| T |
10170040 |
gattgcaagagttcaaatcaaacagcttcaaattaggaaaaatggaagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaatagag |
10169941 |
T |
|
| Q |
350 |
agactttaattgaggctgtacaccaaattccatcgaagaatcagaattatgtacattcttacccccaatagattccattttgatctcactaagtgaatga |
449 |
Q |
| |
|
|||||| |||||||| | ||||||||| ||| | ||||||||||||| | || | |||||| ||| ||| ||||||||||||||||||||||||| || |
|
|
| T |
10169940 |
agacttcaattgagggtatacaccaaaatccggcaaagaatcagaattgtctaaactcttactccctatattttccattttgatctcactaagtgaagga |
10169841 |
T |
|
| Q |
450 |
cacttcctagcaagtgcaaacaagg |
474 |
Q |
| |
|
|| |||||| | ||||||||||||| |
|
|
| T |
10169840 |
caattcctaacgagtgcaaacaagg |
10169816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 150 - 474
Target Start/End: Complemental strand, 10177665 - 10177341
Alignment:
| Q |
150 |
aagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgt |
249 |
Q |
| |
|
||||||| | ||| ||| |||||| ||||||||| ||||| || |||| |||||| ||| |||| || |||||||||| | || |||| |||||||| |
|
|
| T |
10177665 |
aagttcacttcaagtagattcactcttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgt |
10177566 |
T |
|
| Q |
250 |
tttggcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagag |
349 |
Q |
| |
|
| |||| ||||||||| ||||| ||||||||| |||||||||| |||||| |||||| |||||| ||| ||||| ||||| |||||||||||| |
|
|
| T |
10177565 |
gattgcaagagttcaaatcaaacagcttcaaattaggaaaaatggaagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaatagag |
10177466 |
T |
|
| Q |
350 |
agactttaattgaggctgtacaccaaattccatcgaagaatcagaattatgtacattcttacccccaatagattccattttgatctcactaagtgaatga |
449 |
Q |
| |
|
|||||| |||||||| | ||||||||| ||| | ||||||||||||| | || | |||||| ||| ||| ||||||||||||||||||||||||| || |
|
|
| T |
10177465 |
agacttcaattgagggtatacaccaaaatccggcaaagaatcagaattgtctaaactcttactccctatattttccattttgatctcactaagtgaagga |
10177366 |
T |
|
| Q |
450 |
cacttcctagcaagtgcaaacaagg |
474 |
Q |
| |
|
|| |||||| | ||||||||||||| |
|
|
| T |
10177365 |
caattcctaacgagtgcaaacaagg |
10177341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 54 - 397
Target Start/End: Original strand, 10614586 - 10614929
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
|||||||| || | ||| ||||| ||| ||||||| |||||| ||| | |||||| |||| |||||||||||||||||| || | ||| || || || |
|
|
| T |
10614586 |
tgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgt |
10614685 |
T |
|
| Q |
154 |
tcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttg |
253 |
Q |
| |
|
||||||||| ||| |||||| || ||| ||||||| |||||||| ||||||||||||||| | |||||||||| | || ||||| ||| | | |
|
|
| T |
10614686 |
tcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttcatataagagatt |
10614785 |
T |
|
| Q |
254 |
gcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagac |
353 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||| ||||||||||| | || |||| |||||| ||||||| ||| | |||||||||||||| |
|
|
| T |
10614786 |
gcaacgattcaaatcaagcagttgcaaattggggaaattggaagcaaactttataatgccttcatcgcttaaccactgattttttcccaaatagagagac |
10614885 |
T |
|
| Q |
354 |
tttaattgaggctgtacaccaaattccatcgaagaatcagaatt |
397 |
Q |
| |
|
||||||||||| | ||||||||| ||| | | ||||||||||| |
|
|
| T |
10614886 |
tttaattgagggtatacaccaaactccgccaatgaatcagaatt |
10614929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 457
Target Start/End: Complemental strand, 10167534 - 10167377
Alignment:
| Q |
300 |
aacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgaggctgtacaccaaattccatcgaagaatcagaattat |
399 |
Q |
| |
|
||||| |||||| |||||| ||| ||||| ||||| |||||||||||||||||| |||||||| | ||||||||| ||| | ||||||||||||| | |
|
|
| T |
10167534 |
aacattatgatgtgttcatcccttacccatgtattgtaagccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaatcagaattgt |
10167435 |
T |
|
| Q |
400 |
gtacattcttacccccaatagattccattttgatctcactaagtgaatgacacttcct |
457 |
Q |
| |
|
|| | |||||| ||| ||| ||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
10167434 |
ctaaactcttactccctatattttccattttgatctcactaagtgaaggacaattcct |
10167377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 54 - 376
Target Start/End: Complemental strand, 15092257 - 15091935
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt |
153 |
Q |
| |
|
|||||||| || | ||||||||||||| || |||| |||||| ||| | ||||||||| | |||||| ||||||||||| |||| ||| ||| ||||| |
|
|
| T |
15092257 |
tgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagt |
15092158 |
T |
|
| Q |
154 |
tcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctttcgatatgttttg |
253 |
Q |
| |
|
|||||||| ||| ||||| || |||| | || |||||||| ||| |||| |||| | |||||||||| || ||||| |||||||| | |
|
|
| T |
15092157 |
tcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaaaacttgagaaataccttgagatatgttata |
15092058 |
T |
|
| Q |
254 |
gcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagac |
353 |
Q |
| |
|
|||| | ||||||||| |||| || || |||||||||||||||| || ||||| |||||||| |||||| |||||| |||||||||||||||| |
|
|
| T |
15092057 |
gcaatgacccaaatcaagtagctctaagttggggaaaatggaagcaagtattctgatgatttcatcacttaaccggtaattgtgagccaaatagagagac |
15091958 |
T |
|
| Q |
354 |
tttaattgaggctgtacaccaaa |
376 |
Q |
| |
|
||||||||||| | ||||||||| |
|
|
| T |
15091957 |
tttaattgagggtatacaccaaa |
15091935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 364
Target Start/End: Complemental strand, 18315389 - 18315066
Alignment:
| Q |
44 |
caataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctggggg |
143 |
Q |
| |
|
|||||||| |||||||| | |||||| |||||||| ||||||| |||| | |||| ||||| ||||||| |||||||||||||||||| || | ||| |
|
|
| T |
18315389 |
caataacagttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttggga |
18315290 |
T |
|
| Q |
144 |
actctaaagttcattccaattaggttcactgttgaa-cagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacct--t |
240 |
Q |
| |
|
||| |||||||||||||| ||| |||| | ||||| || | |||| |||||| | ||||||| | |||||||| ||||||||| | || |||| | |
|
|
| T |
18315289 |
actttaaagttcattccacgtagcttcattcttgaatcacga-gctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttct |
18315191 |
T |
|
| Q |
241 |
tc-gatatgttttggcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcag |
339 |
Q |
| |
|
|| | |||||| | ||| ||||||||||||| ||||||||| ||||||||||||| ||| || |||||||||| || |||||||||||||| || |
|
|
| T |
18315190 |
tcaggtatgttatcgcagtagctcaaatcaagcaactgcaaattggggaaaatggaagaaaatattttgatgctttcctctcttaaccatgaattgcaag |
18315091 |
T |
|
| Q |
340 |
ccaaatagagagactttaattgagg |
364 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
18315090 |
taaaacggagagactttaattgagg |
18315066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 406
Target Start/End: Complemental strand, 17636290 - 17636148
Alignment:
| Q |
264 |
aaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgag |
363 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | | | | | |||| ||||||||| ||||||||||||||| || ||||| ||||||||| ||||||| |
|
|
| T |
17636290 |
aaatcaagcagctgcaaattggggaaaatggtatcgagctttatgaggctttcatctcttaaccatgaattgtaaggcaaatggagagacttaaattgag |
17636191 |
T |
|
| Q |
364 |
gctgtacaccaaattccatcgaagaatcagaattatgtacatt |
406 |
Q |
| |
|
| | |||| |||| | ||||||||||| |||||| | |||||| |
|
|
| T |
17636190 |
ggtttacaacaaaattcatcgaagaattagaattctctacatt |
17636148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 264 - 364
Target Start/End: Complemental strand, 17627952 - 17627852
Alignment:
| Q |
264 |
aaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgag |
363 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||| || | |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
17627952 |
aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgag |
17627853 |
T |
|
| Q |
364 |
g |
364 |
Q |
| |
|
| |
|
|
| T |
17627852 |
g |
17627852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 243 - 335
Target Start/End: Original strand, 32151483 - 32151575
Alignment:
| Q |
243 |
gatatgttttggcaacttctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattg |
335 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||| |
|
|
| T |
32151483 |
gatatgttatggcaacacctcaaatcaagcagttgcaaattagggaaaatggaagcaaacattttgatgttatcatatgttaaccatgaattg |
32151575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 27922515 - 27922580
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc |
133 |
Q |
| |
|
|||| |||||||| ||| |||||||| | |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
27922515 |
acaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctc |
27922580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 318
Target Start/End: Complemental strand, 1037756 - 1037503
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||||||| ||| ||| |||||| |||| ||||| ||||| ||||||||| |||||||||| | || ||| ||||||| |||| || ||| |
|
|
| T |
1037756 |
acaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagt |
1037657 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacct--ttc-gatatgttttggcaacttctca |
264 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||| |||| ||||||||| || ||||||||| | || |||| ||| |||||||| ||||| |||| |
|
|
| T |
1037656 |
ttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctca |
1037557 |
T |
|
| Q |
265 |
aatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcat |
318 |
Q |
| |
|
||||||| | |||||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
1037556 |
aatcaagaaattgcaaattggggaaaatggaagcaaacaatatgatgttttcat |
1037503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 261 - 404
Target Start/End: Complemental strand, 32785671 - 32785528
Alignment:
| Q |
261 |
ctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaatt |
360 |
Q |
| |
|
||||||||||| || |||||||| | ||||| |||| |||||| ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||| |
|
|
| T |
32785671 |
ctcaaatcaagtagttgcaaattggaaaaaatagaagaaaacatcctgatgctttcatctcttaaccaataattgcgagccaaatggagaaactttaatt |
32785572 |
T |
|
| Q |
361 |
gaggctgtacaccaaattccatcgaagaatcagaattatgtaca |
404 |
Q |
| |
|
|||| |||| |||| |||||| |||||| |||||| |||||| |
|
|
| T |
32785571 |
gagggattacaacaaaatccatcaaagaattagaattttgtaca |
32785528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 45245206 - 45245112
Alignment:
| Q |
39 |
tttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc |
133 |
Q |
| |
|
||||||||||| | |||||||| || |||||| |||||||| |||||| |||||| |||| |||||| |||| | |||||| ||||||||||| |
|
|
| T |
45245206 |
tttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctc |
45245112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 32785856 - 32785773
Alignment:
| Q |
76 |
ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattc |
159 |
Q |
| |
|
||||| |||||||||||| | |||| |||| |||||| ||||||||||||||||||||| | ||| || |||||||||||| |
|
|
| T |
32785856 |
ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattc |
32785773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 488
Target Start/End: Complemental strand, 1037393 - 1037327
Alignment:
| Q |
422 |
ttccattttgatctcactaagtgaatgacacttcctagcaagtgcaaacaaggcagaatctgtgagc |
488 |
Q |
| |
|
||||||||||| |||| |||||||| |||| |||||| | |||||||||| ||| || ||||||||| |
|
|
| T |
1037393 |
ttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagc |
1037327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 344
Target Start/End: Complemental strand, 41889646 - 41889367
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
|||| |||||||| || |||||||||| |||| ||||| ||||||||||| |||||||||||||| | | ||| ||| ||||||||||| ||| ||| |
|
|
| T |
41889646 |
acaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagc |
41889547 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttggccaacacctt--tcga-tatgttttggcaacttctca |
264 |
Q |
| |
|
|||||| ||||||| || || |||||||| ||||| |||||||| | |||||||||| || ||||| || | |||| ||| | |||| |
|
|
| T |
41889546 |
ttcactattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctca |
41889447 |
T |
|
| Q |
265 |
aatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaa |
344 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |||||||| ||| | ||||||| |
|
|
| T |
41889446 |
aatcaagtagctgcaaattagggaaaatggaagcaaacattatgatgtcttcatctgataaccatggattttgagccaaa |
41889367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 417
Target Start/End: Original strand, 28525213 - 28525367
Alignment:
| Q |
263 |
caaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattga |
362 |
Q |
| |
|
||||| ||||| || |||||| ||||||||||||||||| | ||||| |||| || ||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
28525213 |
caaattaagcacctccaaattgtggaaaatggaagcaaaccttatgatattttcgtcccttaaccatgaattgtcacacaaattgagagactttaattga |
28525312 |
T |
|
| Q |
363 |
ggctgtacaccaaattccatcgaagaatcagaattatgtacattcttacccccaa |
417 |
Q |
| |
|
|| |||| |||||| | | || |||||||| | || | | || |||||||||||| |
|
|
| T |
28525313 |
ggatgtagaccaaacttcgtcaaagaatcatagttttcttcactcttacccccaa |
28525367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 41901639 - 41901562
Alignment:
| Q |
56 |
caaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc |
133 |
Q |
| |
|
||||||||| | |||| |||||||| ||| |||||||| | |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
41901639 |
caaaagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctc |
41901562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 41901434 - 41901331
Alignment:
| Q |
261 |
ctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaatt |
360 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||| |||||| | ||||| |||||| ||| ||||||||| |
|
|
| T |
41901434 |
ctcaaatcaagcagctgcaaattggggaaaatggaagcgaacattgtgatgtcttcatcaaataaccacggattgtgagccaatcgaagatactttaatt |
41901335 |
T |
|
| Q |
361 |
gagg |
364 |
Q |
| |
|
|||| |
|
|
| T |
41901334 |
gagg |
41901331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 20478188 - 20478100
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggg |
142 |
Q |
| |
|
|||||||| || | ||||||| ||||| ||||| | | |||| | || ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
20478188 |
tgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctgggg |
20478100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 32267675 - 32267778
Alignment:
| Q |
261 |
ctcaaatcaagcagctgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaatt |
360 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||||| ||| |||| ||||||| || ||||| ||||| ||||||| ||| ||||||||| |
|
|
| T |
32267675 |
ctcaaatcaagcagctgcaaattggagaagatggaagcaagcatggtgatatattcatcaaatagccatggattgtgagccaaacgaagatactttaatt |
32267774 |
T |
|
| Q |
361 |
gagg |
364 |
Q |
| |
|
|||| |
|
|
| T |
32267775 |
gagg |
32267778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 20477966 - 20477866
Alignment:
| Q |
276 |
tgcaaattagggaaaatggaagcaaacataatgatgctttcatcatttaaccatgaattgtcagccaaatagagagactttaattgaggctgtacaccaa |
375 |
Q |
| |
|
|||||||| ||||| || |||||||| || || || |||||||| ||||||||| ||| | | |||| ||||||||||| ||| |||| | |||||||| |
|
|
| T |
20477966 |
tgcaaattggggaacatagaagcaaatattattattatttcatcacttaaccatggattatgacccaagtagagagacttcaatcgaggatatacaccaa |
20477867 |
T |
|
| Q |
376 |
a |
376 |
Q |
| |
|
| |
|
|
| T |
20477866 |
a |
20477866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 1559 - 1395
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtca---acctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaatt |
164 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||| ||| || ||||||| |||||||| |||||||||||||| || ||| |||||||||| ||| | |
|
|
| T |
1559 |
acaattctttgagatcacatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatttcaaat |
1460 |
T |
|
| Q |
165 |
aggttcactgttgaacagtaggctaggttcaaattcctaatcttacaacaactttttaaaacttg |
229 |
Q |
| |
|
|||| ||| | |||||| |||||| |||||||| ||||||||| |||| || |||||||||| |
|
|
| T |
1459 |
aggtccacagatgaacaccaggctaagttcaaatgtctaatcttataacatctccttaaaacttg |
1395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 39177 - 39256
Alignment:
| Q |
54 |
tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc |
133 |
Q |
| |
|
|||||||| || | |||| |||||||| |||||||||||||| |||| | |||||||||| ||| ||||||||||||||| |
|
|
| T |
39177 |
tgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc |
39256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 716 - 586
Alignment:
| Q |
68 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg |
167 |
Q |
| |
|
||||||||| ||| ||| ||| |||||| |||| || || |||||| ||||||||| |||||||||| | || ||| ||||||| |||| || ||| |
|
|
| T |
716 |
acaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagt |
617 |
T |
|
| Q |
168 |
ttcactgttgaacagtaggctaggttcaaat |
198 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |
|
|
| T |
616 |
ttcactcttgaacagtaggctaaattcaaat |
586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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