View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13219_high_2 (Length: 595)
Name: NF13219_high_2
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13219_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 16 - 576
Target Start/End: Complemental strand, 42208487 - 42207928
Alignment:
| Q |
16 |
attcaaaggggaaattgaacaatattactaaaacagtacagtcacattctcatgttagatattatgatttacgagaattagcatacacctctatcttaaa |
115 |
Q |
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| T |
42208487 |
attcaaaggggaaattgaacaatattactaaaacagtacagtcacattctcatgttagatattatgatttacgagaattagcatacacctctatcttaaa |
42208388 |
T |
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| Q |
116 |
tttgagagatgaaatcacagagaaaatatttctacttgcgggtgcaatctgtaaatacttgaaattgcattgaaggcctgaatcaaacctttacattatg |
215 |
Q |
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| T |
42208387 |
tttgagagatgaaatcacagagaaaatatttctacttgcgggtgcaatctgtaaatacttgaaattgcattgaaggcctgaatcaaacctttacattatg |
42208288 |
T |
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| Q |
216 |
aatgaagagtttgtaatgcattttactttgtggtcattgattaaaacaaagtaagcatgtttggtatcacggtgagtttgtaaaatttgccgaaatgatt |
315 |
Q |
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| T |
42208287 |
aatgaagagtttgtaatgcattttactttgtggtcattgattaaaacaaagtaagcatgtttggtatcacggtgagtttgtaaaatttgccgaaatgatt |
42208188 |
T |
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| Q |
316 |
ttgccaacccaactaaattgcaaatatgcatttaagtcatcaatcttttcataccgtcggatttggggttactagagtcatatatgctacccttatcaat |
415 |
Q |
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| T |
42208187 |
tcgccaacccaactaaatggcaaatattcatttaagtcatcaatcttttcataccgtcggatttggggttactagagtcatatatgctacccttatcaa- |
42208089 |
T |
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| Q |
416 |
ttatgaaataagactccatcccgcactgattcacagtcttgtagggtttattattaccctgtaaaattttaacttacaaaattgaaggttcacttttatt |
515 |
Q |
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| T |
42208088 |
ttatgaaataagactccatcccgcactgattcacagtcttgtagggtttatcattaccctgtaaaattttaacttacaaaattgaaggttcacttttatt |
42207989 |
T |
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| Q |
516 |
tgaagcagaagattgaatgttcttgaataaccaagaacacgaaaataggtaacccaacatc |
576 |
Q |
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| T |
42207988 |
tgaagcagaagattgaatgttcttgaataaccaagaacacgaaaataggtaacccaacatc |
42207928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 551
Target Start/End: Complemental strand, 42207775 - 42207742
Alignment:
| Q |
518 |
aagcagaagattgaatgttcttgaataaccaaga |
551 |
Q |
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| T |
42207775 |
aagcagaagattgaatgttcttgaataatcaaga |
42207742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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