View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13219_high_5 (Length: 382)
Name: NF13219_high_5
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13219_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 24984735 - 24984370
Alignment:
| Q |
1 |
tgggaaaaaatctttcaactttaatttagattcatttatgcataaacatgtctaagattatgagataatacaaacatagtgcaccccaaacgtcttctac |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24984735 |
tgggaaaaaatcttacaactttaatttagattcatttatgcataaacatgtctaagattatgagataatacaaacatagtgcaccccaaacgtcttctac |
24984636 |
T |
|
| Q |
101 |
aagcctccgaaatctgcatgatcaaaccacattttataaaattttaaagaggaaaggtgtacatttcttcaatatccaacgggaaaatggtcagattgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24984635 |
aagcctccgaaatctgcatgatcaaaccacattttataaaaatttaaagaggaaaggtgtacatttcttcaatatccaaagggaaaatggtcagattgac |
24984536 |
T |
|
| Q |
201 |
ttctctgaagtgcaacaagaaatgatatgagattagaagacaactcgagccacaattggcgtctaatgagatgagaagtcgagcataaatggccgagatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24984535 |
ttctctgaagtgcaacaagaaatgatatgagat---gagacaactcgagccacaattggcatctaatgagatgagaagtcgagcataaatggccgagatg |
24984439 |
T |
|
| Q |
301 |
aaaatcatttcgaaatcaaccattttagagaatgaacaaatcactggccgacttacacacactgtagta |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24984438 |
aaaatcatttcgaaatcaaccattttagagaatgaacaaatcactggccgacttacacacactgtagta |
24984370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University