View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13219_high_6 (Length: 381)

Name: NF13219_high_6
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13219_high_6
NF13219_high_6
[»] chr3 (2 HSPs)
chr3 (13-364)||(47846420-47846768)
chr3 (156-208)||(14778734-14778786)
[»] chr1 (2 HSPs)
chr1 (112-243)||(4686087-4686218)
chr1 (178-220)||(38720066-38720108)
[»] chr4 (1 HSPs)
chr4 (152-220)||(40253987-40254055)
[»] chr2 (1 HSPs)
chr2 (159-221)||(40819427-40819489)
[»] chr7 (2 HSPs)
chr7 (178-214)||(13297808-13297844)
chr7 (173-209)||(33928495-33928531)
[»] chr5 (1 HSPs)
chr5 (156-220)||(5113879-5113943)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 47846420 - 47846768
Alignment:
Q  13 aatatggttgtaaaatatgttgatcagaaattaaattagatgaagaattctgatcactccttcttccattgctctcatgattagcactagctaataattt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  47846420 aatatggttgtaaaatatgttgatcagaaattaaattagatgaagaattct---cactccttcttccattgctctcatgattagcactagctaataattt 47846516  T
Q  113 attacgtgcttgtaattgttgttctttacgatgcttccctaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttccc 212  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47846517 attacgtgcttgtaattgttgttctttacgatgcttcccaaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttccg 47846616  T
Q  213 ggcaattgacccgcaatcaccgaccatctgcgcgcggcatcaaacaaattaaaccgaaattaataagcataattgttttgctttatacaccgatatttca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846617 ggcaattgacccgcaatcaccgaccatctgcgcgcggcatcaaacaaattaaaccgaaattaataagcataattgttttgctttatacaccgatatttca 47846716  T
Q  313 gattaaatacatgttgttgtcactaaaattgatatatacatagtacacttac 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846717 gattaaatacatgttgttgtcactaaaattgatatatacatagtacacttac 47846768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 14778734 - 14778786
Alignment:
Q  156 agcttctttttcagttttgtgttccaatagttctttatatcattatcggttct 208  Q
    |||||||||||||| ||||||||||||| |||||| | |||||| || |||||    
T  14778734 agcttctttttcagctttgtgttccaattgttcttaacatcattgtctgttct 14778786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 4686218 - 4686087
Alignment:
Q  112 tattacgtgcttgtaattgttgttctttacgatgcttccctaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcc 211  Q
    ||||||||||||||  |||||| |||||||| || ||||| ||||||||||||||||   |||| ||||||||||||||||| |||||||| ||||||||    
T  4686218 tattacgtgcttgttgttgttgatctttacggtgtttccccaaaagcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcc 4686119  T
Q  212 cggcaattgacccgcaatcaccgaccatctgc 243  Q
     ||||||||| | ||||| | |||||| ||||    
T  4686118 tggcaattgagctgcaattatcgaccacctgc 4686087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 38720108 - 38720066
Alignment:
Q  178 tccaatagttctttatatcattatcggttcttcccggcaattg 220  Q
    |||||||||||||||| ||||| |||||||||||||| |||||    
T  38720108 tccaatagttctttatttcattgtcggttcttcccggtaattg 38720066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 40253987 - 40254055
Alignment:
Q  152 taaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcccggcaattg 220  Q
    |||||| ||||| ||||  |||||||||||||||||||||||||||||||| |||| ||| || |||||    
T  40253987 taaaagtttcttcttcaactttgtgttccaatagttctttatatcattatccgttcgtcctggtaattg 40254055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 40819427 - 40819489
Alignment:
Q  159 ttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcccggcaattga 221  Q
    ||||| || |||||||||||||| ||||| || ||||||||||| |||||||| || ||||||    
T  40819427 ttcttctttagttttgtgttccagtagtttttgatatcattatcagttcttcctggtaattga 40819489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 13297844 - 13297808
Alignment:
Q  178 tccaatagttctttatatcattatcggttcttcccgg 214  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  13297844 tccagtagttctttatctcattatcggttcttcccgg 13297808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 33928495 - 33928531
Alignment:
Q  173 tgtgttccaatagttctttatatcattatcggttctt 209  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  33928495 tgtgttccaataattctttatatcattatctgttctt 33928531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 5113943 - 5113879
Alignment:
Q  156 agcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcccggcaattg 220  Q
    |||||||| |||||  | |||||||| |||||||||||||||||||| |||| ||| || |||||    
T  5113943 agcttcttcttcagcctagtgttccagtagttctttatatcattatccgttcgtcctggtaattg 5113879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University