View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13219_high_7 (Length: 347)
Name: NF13219_high_7
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13219_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 23 - 331
Target Start/End: Complemental strand, 12838650 - 12838342
Alignment:
| Q |
23 |
aagctagacttaattaaagctatatgtcgaaaaacacctcattaccatctttgtgttataacattaaaatcaaatttatatgcagtaaagtatattgcat |
122 |
Q |
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| T |
12838650 |
aagctagacttaattaaagctatatgtcgaaaaacacctcattaccatctttgcgttataacattaaaatcaaatttatatgcagtaaagtatattgcat |
12838551 |
T |
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| Q |
123 |
caaataccgacatctctggatttgtccgcgtaacactcaaggttgtcgcgacaagagcaccggtcgtattacatcaacttcaaactgttcaagcgcaaac |
222 |
Q |
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||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12838550 |
caaatactgacatctctggatttgttcgtgtaacactcaaggttgtcgcgacaagagcaccggtcatattacatcaacttcaaactgttcaagcgcaaac |
12838451 |
T |
|
| Q |
223 |
caaggacatacaactgaaagctgctttagataattgcattgcttcatacaccaagatatcaaaagaacttatgccacaagctcagaaatgtgtagacaaa |
322 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12838450 |
caaggacatacaactgaaagctgctttggataattgcattgcttcatacaccaagatatcaaaagaacttgtgccacaagctcagaaatgtgtagacaaa |
12838351 |
T |
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| Q |
323 |
agtgattat |
331 |
Q |
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||||||||| |
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| T |
12838350 |
agtgattat |
12838342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 23 - 331
Target Start/End: Complemental strand, 12831823 - 12831515
Alignment:
| Q |
23 |
aagctagacttaattaaagctatatgtcgaaaaacacctcattaccatctttgtgttataacattaaaatcaaatttatatgcagtaaagtatattgcat |
122 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12831823 |
aagctagacttgattaaagctatatgtcgaaaaacacctcattaccatctttgcgttataacattaaaatcaaatttatatgcagtaaagtatattgcat |
12831724 |
T |
|
| Q |
123 |
caaataccgacatctctggatttgtccgcgtaacactcaaggttgtcgcgacaagagcaccggtcgtattacatcaacttcaaactgttcaagcgcaaac |
222 |
Q |
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||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
12831723 |
caaatactgacatctctggatttgttcgtgtaacactcaaggttgtcgcgacaagagcaccggtcatattacatcaacttcaaactgttcaagtgcaaac |
12831624 |
T |
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| Q |
223 |
caaggacatacaactgaaagctgctttagataattgcattgcttcatacaccaagatatcaaaagaacttatgccacaagctcagaaatgtgtagacaaa |
322 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12831623 |
caaggacatacaactgaaagctgctttggataattgcattgcttcatacaccaagatatcaaaagaacttgtgccacaagctcagaaatgtgtagacaaa |
12831524 |
T |
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| Q |
323 |
agtgattat |
331 |
Q |
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||||||||| |
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| T |
12831523 |
agtgattat |
12831515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 167 - 331
Target Start/End: Complemental strand, 12812608 - 12812445
Alignment:
| Q |
167 |
gtcgcgacaagagcaccggtcgtattacatcaacttcaaactgttcaagcgcaaaccaaggacatacaactgaaagctgctttagataattgcattgctt |
266 |
Q |
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||||||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||||||| |
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| T |
12812608 |
gtcgcgacaagagcaccggtcatattaaagcaacttcaaactgttcaa-cgcaaaccaaggacatgcgactgaaagctgctttggataattgcattgctt |
12812510 |
T |
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| Q |
267 |
catacaccaagatatcaaaagaacttatgccacaagctcagaaatgtgtagacaaaagtgattat |
331 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12812509 |
catacaccaagatatcaaaagaacttgtgccacaagctcagaaatgtgtagacaaaagtgattat |
12812445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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