View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13219_high_9 (Length: 312)
Name: NF13219_high_9
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13219_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 28675950 - 28675647
Alignment:
| Q |
9 |
caaaggcatcatgaagctatctgcaaaacctatttctagtccaggtagaatggaaaagtttccaccaccattgatgagattcttaaaatcaaatgcagca |
108 |
Q |
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| T |
28675950 |
caaaggcatcatgaagctatctgcaaaacccatttctagtccaggtagaatggaaaagtttccaccaccattgatgagattcttaaaatcaaatgcagca |
28675851 |
T |
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| Q |
109 |
aacaaaagcagaggaagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaagaacactacttccattgaaaccaaagaaccttcttccc |
208 |
Q |
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| T |
28675850 |
aacaaaagcagaggaagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaagaacactacttccattgaaaccaaagaaccttcttccc |
28675751 |
T |
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| Q |
209 |
ctaaagtcacttgcatgggtcaagttcgagttaaacgctcctccaaacaacccaccactacaaagggtcgtccctcctccggtgacggagctccgagtaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28675750 |
ctaaagtcacttgcatgggtcaagttcgagttaaacgctcctccaaacaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaa |
28675651 |
T |
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| Q |
309 |
atgc |
312 |
Q |
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|||| |
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| T |
28675650 |
atgc |
28675647 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 40638109 - 40638148
Alignment:
| Q |
194 |
aagaaccttcttcccctaaagtcacttgcatgggtcaagt |
233 |
Q |
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| T |
40638109 |
aagaaccttcttcccctaaagtcacttgcatgggtcaagt |
40638148 |
T |
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