View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13219_low_10 (Length: 340)
Name: NF13219_low_10
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13219_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 23819855 - 23819548
Alignment:
| Q |
15 |
attctggagccgcatatccgtaggttagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23819855 |
attctggagccgcatatccgtaggttagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcatt |
23819756 |
T |
|
| Q |
115 |
ataattctgtgatcaagtcaacaaggaaattttcagatacaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatcta |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23819755 |
ataattctgtgatcaagtcaaaaaggaaattttcagatacaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatcta |
23819656 |
T |
|
| Q |
215 |
gcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcaaacg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
23819655 |
gcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcaccgtgaagaaatgcaaggcctttggcagcaccaacagcaaccttcaaccg |
23819556 |
T |
|
| Q |
315 |
gaggctcc |
322 |
Q |
| |
|
|||||||| |
|
|
| T |
23819555 |
gaggctcc |
23819548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 23832948 - 23832645
Alignment:
| Q |
15 |
attctggagccgcatatccgtaggttagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcatt |
114 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
23832948 |
attccggagccgtatatccagaggttagcttggtaggtacatgacttttatcaaccagggacaagttctttgccaggccaaaatttgaaagttttgcatt |
23832849 |
T |
|
| Q |
115 |
ataattctgtgatcaagtcaacaaggaaattttcagatacaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatcta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
23832848 |
ataattctgtgatcaagtcaacaaggaaattttcagatacaatacataaataaacgtaatatattca--tgtgtgtacaaaaag--acatacggaatcta |
23832753 |
T |
|
| Q |
215 |
gcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcaaacg |
314 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23832752 |
gcaagacatttgaagtctggaaatcgcggtacattgcttttgtttgagtactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcaaacg |
23832653 |
T |
|
| Q |
315 |
gaggctcc |
322 |
Q |
| |
|
||||||| |
|
|
| T |
23832652 |
taggctcc |
23832645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 23829111 - 23828798
Alignment:
| Q |
15 |
attctggagccgcatatccgtaggttagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcatt |
114 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| ||||| | |||||| | ||||||||||||||||||||||| |
|
|
| T |
23829111 |
attctggagctgcatatccgtatgttagcttggtggagacatgacttttatcaaccatggacccgccctttgaatgcccaaaattagaaagttttgcatt |
23829012 |
T |
|
| Q |
115 |
ataattctgtgatcaagtcaacaaggaaattttcagatacaatgcataaataaacataatgtatttatg------tgtgtgtacaaaaagacacatacgg |
208 |
Q |
| |
|
||||||||| |||||| || |||||||||||||||||| || |||||||||| ||||| |||| ||| |||||||| |||| ||||||||| | |
|
|
| T |
23829011 |
ataattctgcgatcaaaccagcaaggaaattttcagatatgatacataaataaatataatatattaatgtgtttttgtgtgtagaaaaggacacatactg |
23828912 |
T |
|
| Q |
209 |
aatctagcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaagagcaacctt |
308 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||| | ||||||||| ||| || ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
23828911 |
aatctagcaagacatttgaggtattgaaatcgcggtattttccttttgtttcagcgttgcgaagaaatgtaaggcctttagcagcaccaagagcaacctt |
23828812 |
T |
|
| Q |
309 |
caaacggaggctcc |
322 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
23828811 |
caaacgtaggctcc |
23828798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 23825173 - 23824868
Alignment:
| Q |
15 |
attctggagccgcatatccgtaggttagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcatt |
114 |
Q |
| |
|
|||||||||| |||||||||||| || || |||| |||| | ||| |||| | |||||| ||||||||||| ||||||||| | ||||| ||||| |
|
|
| T |
23825173 |
attctggagctgcatatccgtagatttgcccggtgtagacacggcttcgatcacctgtggacccatcctttgccagcccaaaattaaagagtttcgcatt |
23825074 |
T |
|
| Q |
115 |
ataattctgtgatcaagtcaacaaggaaattttcagatacaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatcta |
214 |
Q |
| |
|
|||||||||| ||||| ||| | ||||| ||||| | | | | |||||||||||||| || | ||||| |||||||| ||||||||| ||||| | |
|
|
| T |
23825073 |
ataattctgtcatcaaatcagc--ggaaactttcaaacatgttacttaaataaacataatttactcatgtggctgtacaaatggacacataccgaatcca |
23824976 |
T |
|
| Q |
215 |
gcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcaaacg |
314 |
Q |
| |
|
|||||| |||||||||||| |||| |||| |||| |||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
23824975 |
gcaagatatttgaagtcttcaaattttggtaaatcgattttgtttcggcactgtgaaggaatgcaagacatttggcagcaccaagagcaaccttcaaacg |
23824876 |
T |
|
| Q |
315 |
gaggctcc |
322 |
Q |
| |
|
||||||| |
|
|
| T |
23824875 |
taggctcc |
23824868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 322
Target Start/End: Complemental strand, 41459222 - 41459101
Alignment:
| Q |
201 |
acatacggaatctagcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaaga |
300 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||| ||||| | || ||| |||| ||| ||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
41459222 |
acatacagaatccaacaagacatttgaagtcttaaaatctctatatatcactttattttcagcactgtgcagaaatgcaagccctttggcagcgtcaaga |
41459123 |
T |
|
| Q |
301 |
gcaaccttcaaacggaggctcc |
322 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
41459122 |
gcaaccttcagacggaggctcc |
41459101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 322
Target Start/End: Complemental strand, 41442440 - 41442319
Alignment:
| Q |
201 |
acatacggaatctagcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaaga |
300 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||| ||||| | || ||| |||| ||| | ||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
41442440 |
acatacggaatccaacaagatatttgaagtcttaaaatctctatatatcactttattttcatcactgtgcagaaatgcaagccctttggcagcgtcaaga |
41442341 |
T |
|
| Q |
301 |
gcaaccttcaaacggaggctcc |
322 |
Q |
| |
|
|||||||||| ||| ||||||| |
|
|
| T |
41442340 |
gcaaccttcagacgaaggctcc |
41442319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 41448814 - 41448755
Alignment:
| Q |
263 |
cactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcaaacggaggctcc |
322 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
41448814 |
cactgtgctgaaacgcaagccctttggcagcaccaagagcaaccttcagacagaggctcc |
41448755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 34150435 - 34150347
Alignment:
| Q |
222 |
atttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttca |
310 |
Q |
| |
|
||||||||| || || ||||| || ||| |||||| || | | ||||||||| ||||||| || || |||||| ||||||||||||||| |
|
|
| T |
34150435 |
atttgaagttttaaagtcacgatatatcacttttgcttcatcgctgtgaagatatgcaagacccttagcagcatcaagagcaaccttca |
34150347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University