View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13219_low_16 (Length: 235)
Name: NF13219_low_16
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13219_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43163347 - 43163127
Alignment:
| Q |
1 |
agtgagatggctcacctgannnnnnnaccatcctttgagcctacatcaaacctccccaaaagctccaaagagttaaaaagataggcaccatcactgctaa |
100 |
Q |
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| T |
43163347 |
agtgagatggctcacctgatttttttaccatcctttgagcctatatcaaacctccccaaaagctccaaagagttatcaagataggcatcatcactgctaa |
43163248 |
T |
|
| Q |
101 |
gaactctaagctctaaaactgaaataaaaggtgtacccttgccagtattaaacaaacaaacatgaacataatctgaggatgcagcataaatgatttcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43163247 |
gaactctaagctctaaaactgaaataaaaggtgtacccttgccagtattaaacaaacaaacatgaacataatctgaggatgcagcataaatgatttcctt |
43163148 |
T |
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| Q |
201 |
gctaattacactagatgaatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43163147 |
gctaattacactagatgaatt |
43163127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 43173082 - 43172870
Alignment:
| Q |
5 |
agatggctcacctgannnnnnnaccatcctttgagcctacatcaaacctccccaaaagctccaaagagttaaaaagataggcaccatcactgctaagaac |
104 |
Q |
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||||||||||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
43173082 |
agatggctcacctgatttctttaccaccctttgtgcctacatcaaacctcgccaaaagctccaaagagttaaaaagataggca---tcactgttaagaac |
43172986 |
T |
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| Q |
105 |
tctaagctctaaaactgaaataaaaggtgtacccttgccagtattaaacaaacaaacatgaacataatctgaggatgcagcataaatgatttccttgcta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43172985 |
tctaagctctaaaactgaaataaaaggtgtacccttgccagtattaaacatacaaacatgaacataatctgaggatgcagcataaatgatttccttggtt |
43172886 |
T |
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| Q |
205 |
attacactagatgaat |
220 |
Q |
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||||||| ||||||| |
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| T |
43172885 |
attacaccggatgaat |
43172870 |
T |
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