View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13219_low_17 (Length: 226)
Name: NF13219_low_17
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13219_low_17 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43163833 - 43163608
Alignment:
| Q |
1 |
tgtcactggcatttgctggaattgatgttgttcgcatcacattggagggtggtaccggcgtaaagctgaatgaaggtgcttggtctatggtgagtgaagt |
100 |
Q |
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| T |
43163833 |
tgtcactggcatttgctggaattgctgttgttcgcatcacattggagggtggtaccggcgtaaagctgaatgaaggtgcttggtctatggtgagtgaagt |
43163734 |
T |
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| Q |
101 |
gtttannnnnnnccaatcaattgagttataaggtgtccatgttctgtcataaacatcatctggatatctttggaaaaggaaaaagtgtaagtacttgtga |
200 |
Q |
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| T |
43163733 |
gtctatttttttccaatcaattgagttataaggtgtccatgttctgtcataaacatcatctggatatctttggaaaaggaaaaagtgtaagtacttgtga |
43163634 |
T |
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| Q |
201 |
aactgtttggagagtttatagaaaca |
226 |
Q |
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| T |
43163633 |
aacagtttggagagtttatagaaaca |
43163608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 43173509 - 43173306
Alignment:
| Q |
1 |
tgtcactggcatttgctggaattgatgttgttcgcatcacattggagggtggtaccggcgtaaagctgaatgaaggtgct---tggtctatggtgagtga |
97 |
Q |
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| T |
43173509 |
tgtcactggcatttgctggaattgctgttgttctcatgacagtggagggtggtgccattaaaaagttgaatggaggtgctctttggtccatggtgagtga |
43173410 |
T |
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| Q |
98 |
agtgtttannnnnnnccaatcaattgagttataaggtgtccatgttctgtcataaacatcatctggatatctttggaaaaggaaaaagtgtaagtacttg |
197 |
Q |
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| T |
43173409 |
agagtcgattttttcccaatcaattgaattataagatgtccatgttctgtcataaatatcatctggatatctttggaaaaggaaaaagtgtaagtacttg |
43173310 |
T |
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| Q |
198 |
tgaa |
201 |
Q |
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|||| |
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| T |
43173309 |
tgaa |
43173306 |
T |
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