View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13219_low_3 (Length: 523)

Name: NF13219_low_3
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13219_low_3
NF13219_low_3
[»] chr6 (26 HSPs)
chr6 (312-513)||(5433775-5433976)
chr6 (307-511)||(5447322-5447526)
chr6 (312-502)||(5096448-5096638)
chr6 (311-501)||(5128569-5128759)
chr6 (305-503)||(5278299-5278497)
chr6 (305-503)||(5284539-5284737)
chr6 (305-503)||(5176472-5176670)
chr6 (320-503)||(5074058-5074241)
chr6 (305-503)||(5690309-5690507)
chr6 (305-492)||(5354775-5354962)
chr6 (312-502)||(5157779-5157969)
chr6 (312-502)||(5102765-5102955)
chr6 (307-513)||(5344596-5344802)
chr6 (310-510)||(5147039-5147239)
chr6 (305-503)||(5257484-5257682)
chr6 (305-498)||(5383059-5383252)
chr6 (305-434)||(5396683-5396812)
chr6 (307-501)||(5182079-5182273)
chr6 (303-498)||(5446888-5447083)
chr6 (312-502)||(5370311-5370501)
chr6 (338-502)||(5244018-5244182)
chr6 (335-502)||(5350159-5350324)
chr6 (312-502)||(5066845-5067035)
chr6 (312-502)||(5425650-5425840)
chr6 (47-116)||(5433172-5433242)
chr6 (213-279)||(5433556-5433622)
[»] chr3 (4 HSPs)
chr3 (311-513)||(47986992-47987194)
chr3 (311-513)||(47996279-47996481)
chr3 (311-513)||(48005566-48005768)
chr3 (311-513)||(48014851-48015053)
[»] chr4 (20 HSPs)
chr4 (313-503)||(4344387-4344577)
chr4 (305-510)||(4124082-4124287)
chr4 (305-501)||(4360810-4361006)
chr4 (314-501)||(4335087-4335274)
chr4 (307-510)||(4133566-4133769)
chr4 (317-503)||(4320769-4320955)
chr4 (317-436)||(6772849-6772968)
chr4 (329-436)||(6815227-6815334)
chr4 (314-436)||(6498743-6498865)
chr4 (308-436)||(6758460-6758588)
chr4 (308-492)||(6837010-6837194)
chr4 (338-436)||(6752726-6752824)
chr4 (308-493)||(6715503-6715688)
chr4 (375-435)||(6650870-6650930)
chr4 (329-436)||(6675460-6675567)
chr4 (375-493)||(6532392-6532510)
chr4 (338-436)||(6728172-6728270)
chr4 (326-510)||(7885534-7885718)
chr4 (375-493)||(6796590-6796708)
chr4 (375-436)||(6545665-6545726)
[»] chr7 (3 HSPs)
chr7 (307-503)||(36213979-36214175)
chr7 (342-510)||(18935156-18935324)
chr7 (335-510)||(34724729-34724904)
[»] scaffold0294 (1 HSPs)
scaffold0294 (305-502)||(9051-9248)
[»] chr5 (1 HSPs)
chr5 (307-503)||(8877344-8877540)
[»] scaffold0552 (1 HSPs)
scaffold0552 (329-436)||(8502-8609)
[»] scaffold0373 (1 HSPs)
scaffold0373 (308-492)||(9426-9610)
[»] scaffold0813 (1 HSPs)
scaffold0813 (375-435)||(5044-5104)
[»] scaffold0286 (1 HSPs)
scaffold0286 (375-435)||(6462-6522)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 312 - 513
Target Start/End: Original strand, 5433775 - 5433976
Alignment:
Q  312 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 411  Q
    |||||||||||||  ||||||| ||||||||||| || || ||||||| ||||||||| |||||||| |||||||||||||| |||||| ||||||||||    
T  5433775 tgttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctgacacaaacaccagacttttcaaatttgcctaatcttgaaaa 5433874  T
Q  412 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggccta 511  Q
    | | ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  5433875 gttagtactcacagattgtccaagtctttctgagatttctcctagcattggccatctcaatgaaattcttctgataaatttggaagattgtattggccta 5433974  T
Q  512 tg 513  Q
    ||    
T  5433975 tg 5433976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 307 - 511
Target Start/End: Original strand, 5447322 - 5447526
Alignment:
Q  307 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 406  Q
    |||| |||||||||||||| |||| || ||||||| ||||||||| ||||||||||||  ||| ||| | | ||| |||||||||  ||||||| |||||    
T  5447322 atttttgttcttgcagaggatggaaaatctgaaaaatctcaatcttagtcattctcatcgtctgacaaacatcccggacttttcatgcttgcctaatctt 5447421  T
Q  407 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactg 506  Q
    |||||||| |||||||||||||||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  5447422 gaaaagctagtactcaaagattgtccaatgttgtctgaggtttctcctagcattggacatctcaataaaattcttctgataaatttggaagattgtattg 5447521  T
Q  507 gccta 511  Q
    |||||    
T  5447522 gccta 5447526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 312 - 502
Target Start/End: Original strand, 5096448 - 5096638
Alignment:
Q  312 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 411  Q
    |||||||||||||| |||| |||||||||||||| ||||| ||||||||||||| ||| ||||| ||||||||||||||| || ||||| ||||||| ||    
T  5096448 tgttcttgcagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctgacacacaccccagacttttcatacatgcctaatcttgagaa 5096547  T
Q  412 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 502  Q
    ||| ||||| |||||||||||||   | |||||| ||||||||||||||||| |||||| | |||||||||| ||||||||||||||||||    
T  5096548 gctggtacttaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgt 5096638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 311 - 501
Target Start/End: Complemental strand, 5128759 - 5128569
Alignment:
Q  311 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 410  Q
    ||||||||||||| | ||||||| ||||||||||||||||  ||||||||||||| ||| ||||| ||||||||||||||| | || ||| |||||||||    
T  5128759 atgttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctgacacacaccccagacttttcatatttacctaatcttgaaa 5128660  T
Q  411 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattg 501  Q
    |||| ||||||||||||||| |||   | |||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  5128659 agctagtactcaaagattgttcaatgttgtctgaggtttctactagcatcggacatctcaataaaattcttctgataaatttggaagattg 5128569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 305 - 503
Target Start/End: Original strand, 5278299 - 5278497
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    |||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||| | |||||||||||||||||| ||||| |||    
T  5278299 atatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatc 5278398  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    ||||||||||  |||||| |||||| |||||  | | |||| |||||| |||||||||| ||||| ||||||||||||||||| | |||||||||||||    
T  5278399 ttgaaaagcttatactcatagattgcccaaggttgtgtgaggtttctcatagcattggatatctcgataaaattcttctgataaacttggaagattgta 5278497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 305 - 503
Target Start/End: Complemental strand, 5284737 - 5284539
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||| |||| || ||| |||||||| ||| ||||| |||    
T  5284737 atatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacacgaagccctgacttttcgaacatgcctaatc 5284638  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    |||||||||| || ||||||||||||||||| || |||||| |||| |||||||||||| ||||||||||||||  | ||||| |||| |||| |||||    
T  5284637 ttgaaaagctagtgctcaaagattgtccaaggctatctgaggtttcacctagcattggaaatctcaataaaattgctttgataaattttgaaggttgta 5284539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 305 - 503
Target Start/End: Original strand, 5176472 - 5176670
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    |||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||| | |||||||||||||||||| ||||| |||    
T  5176472 atatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatc 5176571  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    ||||||||||  |||||| |||||| |||||  |   |||| |||| | |||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  5176572 ttgaaaagcttatactcatagattgcccaaggttgcgtgaggtttcccatagcattggacatctcgataaaattcttctgataaacttggaagattgta 5176670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 320 - 503
Target Start/End: Complemental strand, 5074241 - 5074058
Alignment:
Q  320 cagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtac 419  Q
    |||||| ||||||| |||||||| |||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||| |||||||| | || ||||    
T  5074241 cagaggttggagaagctgaaaatactcaatcttagtcattctcattatctgacgcaaactccagatttttcaaacttgcctaatcttgaacaactagtac 5074142  T
Q  420 tcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    ||| ||||||||||||  | || ||| |||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  5074141 tcacagattgtccaaggttgtcagaggtttctcatagtattgaacatctcaataaaattcttctgataaatttggaagattgta 5074058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 305 - 503
Target Start/End: Complemental strand, 5690507 - 5690309
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    |||||||| |||||| ||| | ||||||| || |||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||| | ||||| |||    
T  5690507 atatttatattcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcattatctgacacagaccccagacttttcaatcatgcctaatc 5690408  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    ||||||||||  |||||||||||||||||||  |   |||| |||| | |||||||||||||||| | ||||||||||||||| |||||||||||||||    
T  5690407 ttgaaaagctaatactcaaagattgtccaaggttgcgtgaggtttcccatagcattggacatctcgacaaaattcttctgataaatttggaagattgta 5690309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 305 - 492
Target Start/End: Complemental strand, 5354962 - 5354775
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    |||| |||||||||||||||  ||||| | ||||||||||||||||| |||||||| |||| ||| ||||| ||||| ||||||||  || ||||| |||    
T  5354962 atatgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacacatacccctgacttttcttacatgcctaatc 5354863  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagattt 492  Q
    |||||||||| |||||||||||||||||||   | |||||  ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  5354862 ttgaaaagcttgtactcaaagattgtccaatgttatctgaagtttctccaagcattggacatctcaataaaattcttctgataaattt 5354775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 312 - 502
Target Start/End: Complemental strand, 5157969 - 5157779
Alignment:
Q  312 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 411  Q
    |||||||||||| | |||| || || |||||||| ||||| ||||||||||||| ||| || || ||||||||||||||| || ||||| ||||||| ||    
T  5157969 tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa 5157870  T
Q  412 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 502  Q
    ||| |||||||||||||||||||   | |||||| ||||||||||||||||| |||||| | |||||||||| ||||||||||||||||||    
T  5157869 gctggtactcaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgt 5157779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 312 - 502
Target Start/End: Complemental strand, 5102955 - 5102765
Alignment:
Q  312 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 411  Q
    |||||||||||||| |||| || ||||||||||| ||||| ||||||||||||| ||| || || ||||| ||||||||| |||||||| ||||||| ||    
T  5102955 tgttcttgcagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacacccctgacttttcatacttgcctaatcttgagaa 5102856  T
Q  412 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 502  Q
    ||| |||||||||||||||||||   | |||||| ||| ||||| ||||||| |||||| | |||| ||||| ||||||||||||||||||    
T  5102855 gctggtactcaaagattgtccaatgttgtctgaggtttgtcctaccattggagatctcactgaaatacttctaatagatttggaagattgt 5102765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 307 - 513
Target Start/End: Original strand, 5344596 - 5344802
Alignment:
Q  307 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 406  Q
    |||||||||||| |||| | ||||||| ||||||||||||||||| |||||||||||||| || | ||||||||| ||||||||  |||| ||| |||||    
T  5344596 atttatgttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctgatacaaaccccggacttttcttacttacctaatctt 5344695  T
Q  407 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactg 506  Q
    |||||| | ||||||   |||||||||||| | | ||||||||||| |||||||||| ||||||| ||||||||||| ||  |||||||||| |||| |     
T  5344696 gaaaagttagtactcgtggattgtccaagtttgtgtgagatttctcatagcattggagatctcaagaaaattcttctcattaatttggaagactgtatta 5344795  T
Q  507 gcctatg 513  Q
    |||||||    
T  5344796 gcctatg 5344802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 310 - 510
Target Start/End: Complemental strand, 5147239 - 5147039
Alignment:
Q  310 tatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaa 409  Q
    |||||||||||||||| ||||||| || ||||||||||| || ||||| ||||||||| | ||||| |||||| |||||| |||||||||| ||||||||    
T  5147239 tatgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacacagaccccaaactttttaaacttgcctaatcttgaa 5147140  T
Q  410 aagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcc 509  Q
     | || ||||||   ||||||||||   | |||||  |||||| ||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||    
T  5147139 caactagtactctctgattgtccaatgttgtctgaagtttctcatagtattggatatctcaataaaattcttctgataaatttggaagattgtactagcc 5147040  T
Q  510 t 510  Q
    |    
T  5147039 t 5147039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 305 - 503
Target Start/End: Complemental strand, 5257682 - 5257484
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| | || ||| |||  || ||| |||||||| ||| ||||| |||    
T  5257682 atatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccgttgtctcacaagaagccctgacttttccaacatgcctaatc 5257583  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    |||||||| | |||||||||||||||||||  || |||  | ||||| | ||||||||| ||||||| |||||| || ||||| |||||||||||||||    
T  5257582 ttgaaaagttagtactcaaagattgtccaatgctatctagggtttcttcaagcattggaaatctcaagaaaattgttttgataaatttggaagattgta 5257484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 305 - 498
Target Start/End: Original strand, 5383059 - 5383252
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    ||||||||||||||||||||| |||||| ||||||||| || || || |||||||||||||| ||    || ||||||||||| ||||| |||||| |||    
T  5383059 atatttatgttcttgcagaggatggagatactgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatc 5383158  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaaga 498  Q
    |||||||||| ||||||  ||||||||| ||  | || ||| ||||||||||||||||| ||||||| ||||||||||||||  ||||||||||    
T  5383159 ttgaaaagctagtactcgcagattgtccgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaaga 5383252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 305 - 434
Target Start/End: Original strand, 5396683 - 5396812
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||    
T  5396683 atatttatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacacagaccccagacttttcaaacatgcctaatc 5396782  T
Q  405 ttgaaaagctcgtactcaaagattgtccaa 434  Q
    ||||| | || ||| |||  ||||||||||    
T  5396783 ttgaacaactagtagtcactgattgtccaa 5396812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 307 - 501
Target Start/End: Complemental strand, 5182273 - 5182079
Alignment:
Q  307 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 406  Q
    |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||  || | || ||||||||||||||||||||| | |||    
T  5182273 atttctgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctgtcaaagactccagacttttcaaacttgcctaacctt 5182174  T
Q  407 gaaaagctcgtactcaaagattgtcc-aagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattg 501  Q
    ||| || | ||||||| ||||||||| |||| | |||||  |||| |  || |||||| ||||||||||||| ||| ||||| |||||||||||||    
T  5182173 gaacagttagtactcacagattgtccgaagt-tgtctgaagtttcccaaagtattggagatctcaataaaatacttttgataaatttggaagattg 5182079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 303 - 498
Target Start/End: Original strand, 5446888 - 5447083
Alignment:
Q  303 atatatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgcctta 402  Q
    |||| ||| |||||||||||||| ||||||| || |||||||||||||| || ||||| || ||||| ||||||| ||| ||||||||||||  |||| |    
T  5446888 atatttttttgttcttgcagaggatggagaagctaaaaattctcaatcttagccattcgcactatctcacacaaagccctgacttttcaaacacgcctaa 5446987  T
Q  403 tcttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaaga 498  Q
    |||| |||| || |||||||||||||| |||    | |||||| |||| ||||||||  |||||||||||||||||||||||||| | ||||||||    
T  5446988 tcttcaaaaactagtactcaaagattgcccactgttgtctgaggtttcacctagcatcagacatctcaataaaattcttctgataaacttggaaga 5447083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 312 - 502
Target Start/End: Original strand, 5370311 - 5370501
Alignment:
Q  312 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 411  Q
    |||||||||||| | |||| || || |||||||| ||||| ||||||||||||| ||| || || ||||||||||||||| |||||||| | ||||||||    
T  5370311 tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa 5370410  T
Q  412 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 502  Q
    | | ||||||||||||||| |||  || |||||| ||||||||||||||||  |||||    |||||||||| |||||||| |||||||||    
T  5370411 gttagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgt 5370501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 338 - 502
Target Start/End: Complemental strand, 5244182 - 5244018
Alignment:
Q  338 aaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagtc 437  Q
    |||||||| ||||| ||||||||||||| ||| || || ||||||||||||||| || || |  ||||||||||||| ||||||||||||||| | |||     
T  5244182 aaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgtcaaatcttgaaaagctagtactcaaagattgttc-agtg 5244084  T
Q  438 tt-tctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 502  Q
    || || ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||||    
T  5244083 ttgtccgagatttctcctagcattgggaatctcagtgaaattcttctaatagatttggaagattgt 5244018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 335 - 502
Target Start/End: Original strand, 5350159 - 5350324
Alignment:
Q  335 ctgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaa 434  Q
    ||||||||||| ||||| |||||||||  || ||| ||||| ||||  ||||||||| || ||||| ||||||||||||| |||||||||||||||||||    
T  5350159 ctgaaaattctaaatcttagtcattcttgttgtctgacacacaccc--gacttttcatacatgcctaatcttgaaaagctagtactcaaagattgtccaa 5350256  T
Q  435 gtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 502  Q
       | || ||| ||||||||||||||||| |||||| | |||||||||| ||||||||||| ||||||    
T  5350257 tgttgtccgaggtttctcctagcattggagatctcagtgaaattcttctaatagatttggaggattgt 5350324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 502
Target Start/End: Complemental strand, 5067035 - 5066845
Alignment:
Q  312 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 411  Q
    |||||||||||||| |||| || ||||||||||| ||||| || |||||||||| ||| |  || ||||| ||||||||| |  ||||| ||||||||||    
T  5067035 tgttcttgcagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctgatgcacacccctgacttttcatatatgcctaatcttgaaaa 5066936  T
Q  412 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 502  Q
    ||| |||||||||||||||||||   | || ||| |||||||||  || ||| | |||| | |||||||||| ||||||||||||||||||    
T  5066935 gctagtactcaaagattgtccaatattgtccgaggtttctcctacaataggaaaactcagtgaaattcttctaatagatttggaagattgt 5066845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 502
Target Start/End: Original strand, 5425650 - 5425840
Alignment:
Q  312 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 411  Q
    |||| |||||| || |||| || ||||||||||| ||||| ||||||||||||| ||| || |  ||||| |||||| ||  | ||||| ||||||||||    
T  5425650 tgtttttgcagtggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcgcacccctgactttacattcatgcctaatcttgaaaa 5425749  T
Q  412 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 502  Q
    ||| || ||||||||||||||||   | |||||||||||||||||||||||| ||||||   |||||||||| ||| |||| |||||||||    
T  5425750 gctggtgctcaaagattgtccaatgttgtctgagatttctcctagcattggaaatctcagagaaattcttctaataaatttagaagattgt 5425840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 5433172 - 5433242
Alignment:
Q  47 gaaaggatgaagtatcattttaaatctttgacct--atcagaaaaattttcagacatggcttttcataattt 116  Q
    ||||||||| ||||||||||||||||||||| ||  ||||| |||||||||||||||||| |||||||||||    
T  5433172 gaaaggatgtagtatcattttaaatctttgaactacatcagcaaaattttcagacatggc-tttcataattt 5433242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 5433556 - 5433622
Alignment:
Q  213 atttccatgtacccatgtattccaacaattacatgatctgatgcttatccttcattcatgatacctt 279  Q
    |||||||| ||| ||||||||||||||||| || |||||   ||||||||||||| | |||||||||    
T  5433556 atttccatctactcatgtattccaacaattccaagatctatcgcttatccttcatacgtgatacctt 5433622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 311 - 513
Target Start/End: Complemental strand, 47987194 - 47986992
Alignment:
Q  311 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 410  Q
    ||||||||||||| | |||| || || |||||||||||||| ||||||||||||||||| |||| || ||  |||||||||||| ||||| |||| ||||    
T  47987194 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 47987095  T
Q  411 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 510  Q
    |||| |||||||||||||| ||||   | |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||| | ||||    
T  47987094 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 47986995  T
Q  511 atg 513  Q
    |||    
T  47986994 atg 47986992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 311 - 513
Target Start/End: Complemental strand, 47996481 - 47996279
Alignment:
Q  311 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 410  Q
    ||||||||||||| | |||| || || |||||||||||||| ||||||||||||||||| |||| || ||  |||||||||||| ||||| |||| ||||    
T  47996481 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 47996382  T
Q  411 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 510  Q
    |||| |||||||||||||| ||||   | |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||| | ||||    
T  47996381 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 47996282  T
Q  511 atg 513  Q
    |||    
T  47996281 atg 47996279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 311 - 513
Target Start/End: Complemental strand, 48005768 - 48005566
Alignment:
Q  311 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 410  Q
    ||||||||||||| | |||| || || |||||||||||||| ||||||||||||||||| |||| || ||  |||||||||||| ||||| |||| ||||    
T  48005768 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 48005669  T
Q  411 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 510  Q
    |||| |||||||||||||| ||||   | |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||| | ||||    
T  48005668 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 48005569  T
Q  511 atg 513  Q
    |||    
T  48005568 atg 48005566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 311 - 513
Target Start/End: Complemental strand, 48015053 - 48014851
Alignment:
Q  311 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 410  Q
    ||||||||||||| | |||| || || |||||||||||||| ||||||||||||||||| |||| || ||  |||||||||||| ||||| |||| ||||    
T  48015053 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 48014954  T
Q  411 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 510  Q
    |||| |||||||||||||| ||||   | |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||| | ||||    
T  48014953 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 48014854  T
Q  511 atg 513  Q
    |||    
T  48014853 atg 48014851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 313 - 503
Target Start/End: Original strand, 4344387 - 4344577
Alignment:
Q  313 gttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaag 412  Q
    ||||||||||||| ||||  | ||||||||||||||||| ||||||||||||| ||| ||||| || || ||||||||| |||||||| |||||||||||    
T  4344387 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacacagacgcctgacttttcatacttgcctaatcttgaaaag 4344486  T
Q  413 ctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    || |||||||||||||||||||| || ||||||||||| |  || |||||||||||||| ||||||||| ||||| ||||| || ||||||    
T  4344487 ctagtactcaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaacaaaattcttttgataaatttgaaaaattgta 4344577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 305 - 510
Target Start/End: Complemental strand, 4124287 - 4124082
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    |||||| |||||||||||||  ||||| | ||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| |||||||| | |    
T  4124287 atatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagacccctgacttttcatacttgcctaacc 4124188  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtac 504  Q
    |||||||||| |||||||||||||||||||| || |||||| | || | ||  ||||||||||| || ||| ||||| ||||| ||||| ||||||||||    
T  4124187 ttgaaaagctggtactcaaagattgtccaaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatttgaaagattgtac 4124088  T
Q  505 tggcct 510  Q
    | ||||    
T  4124087 tagcct 4124082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 305 - 501
Target Start/End: Original strand, 4360810 - 4361006
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    ||||||||||| || ||| || ||||| | ||||||||||||||||| ||||||||||| ||||| ||||| || || ||||||||| |||||||| |||    
T  4360810 atatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatc 4360909  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattg 501  Q
    |||||||||| ||||| |||||||||||||| || ||||||||||| |  || |||||||||||||| ||||||||| ||||| ||||| |||||||    
T  4360910 ttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatttgaaagattg 4361006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 314 - 501
Target Start/End: Original strand, 4335087 - 4335274
Alignment:
Q  314 ttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagc 413  Q
    |||||||||||| ||||| |  |||||||||||||||| ||||||||||||||||||||||| ||||| || |||||| |||||||| |||||||||| |    
T  4335087 ttcttgcagaggatggagcagttgaaaattctcaatcttagtcattctcattatctaacacagacccctgatttttcatacttgcctaatcttgaaaacc 4335186  T
Q  414 tcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattg 501  Q
    | ||||||||||||||||| || || |||||| | || | ||  ||||||||||| || ||| ||||| ||||| ||||| |||||||    
T  4335187 tagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatttgaaagattg 4335274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 307 - 510
Target Start/End: Complemental strand, 4133769 - 4133566
Alignment:
Q  307 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 406  Q
    |||| |||||||||||||||||||||| || ||| |||||||||| ||||||||||||| ||||  ||| |||||||| |||||| || ||||| ||||     
T  4133769 atttttgttcttgcagaggctggagaatctaaaatttctcaatcttagtcattctcattgtctagtacagaccccagatttttcacacatgcctaatcta 4133670  T
Q  407 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactg 506  Q
    ||||| ||  ||||||||||||||||||| || |||||| |||| | || |||||| |||||| ||||| ||||  | ||| ||||| |||| ||||||     
T  4133669 gaaaaactaatactcaaagattgtccaaggctgtctgaggtttcccataccattggtcatctccataaagttctcattataaatttgaaagactgtacta 4133570  T
Q  507 gcct 510  Q
    ||||    
T  4133569 gcct 4133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 317 - 503
Target Start/End: Complemental strand, 4320955 - 4320769
Alignment:
Q  317 ttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcg 416  Q
    ||||||||| ||||| | ||||| ||||| ||||| |||||||||||| || | ||||| ||||| ||||||||| |||||||| ||||||||||||| |    
T  4320955 ttgcagaggatggagcagctgaagattctaaatcttagtcattctcatcatttgacacagacccctgacttttcatacttgcctaatcttgaaaagctag 4320856  T
Q  417 tactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    | ||| ||||||| ||||| || ||| || |||| | |||||||||||||||||| ||| || || ||||| ||||| |||||||||    
T  4320855 tgctcgaagattgcccaaggctgtctcaggtttcccatagcattggacatctcaaaaaagttgttttgataaatttgaaagattgta 4320769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 436
Target Start/End: Original strand, 6772849 - 6772968
Alignment:
Q  317 ttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcg 416  Q
    ||||||| ||| ||||| || |||||||| ||||| |||||||| ||| || | ||  ||||||||||||||||| |||||||  ||||||||||||| |    
T  6772849 ttgcagatgctagagaatctaaaaattcttaatcttagtcattcccatgatttgaccgaaaccccagacttttcatacttgccgaatcttgaaaagctag 6772948  T
Q  417 tactcaaagattgtccaagt 436  Q
    |||||||  |||||||||||    
T  6772949 tactcaagaattgtccaagt 6772968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 436
Target Start/End: Original strand, 6815227 - 6815334
Alignment:
Q  329 gagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagatt 428  Q
    ||||| || |||||||| ||||||||||||||||   || | ||  |||||||||||||| || |||||||  ||||||||||||| ||||||||| |||    
T  6815227 gagaatctaaaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaatt 6815326  T
Q  429 gtccaagt 436  Q
    ||||||||    
T  6815327 gtccaagt 6815334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 436
Target Start/End: Complemental strand, 6498865 - 6498743
Alignment:
Q  314 ttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagc 413  Q
    |||||||||| ||| ||||| || |||||||| ||||| |||||||||||  || | |   |||||||||||||| |  |||||||| || |||||||||    
T  6498865 ttcttgcagatgctagagaatcttaaaattcttaatcttagtcattctcagaatttgattgaaaccccagactttacgtacttgcctaatattgaaaagc 6498766  T
Q  414 tcgtactcaaagattgtccaagt 436  Q
    | ||||||||||| |||||||||    
T  6498765 tagtactcaaagactgtccaagt 6498743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 436
Target Start/End: Original strand, 6758460 - 6758588
Alignment:
Q  308 tttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttg 407  Q
    ||||| |||||||||| ||| ||||| ||||||||||| ||||| ||||||||||   || | ||  ||| ||||||||||||  |||| ||| ||||||    
T  6758460 tttattttcttgcagaagctagagaatctgaaaattcttaatcttagtcattctctggatttgactaaaagcccagacttttcctactttcctaatcttg 6758559  T
Q  408 aaaagctcgtactcaaagattgtccaagt 436  Q
    ||||||| || |||||| | |||||||||    
T  6758560 aaaagctggtgctcaaaaactgtccaagt 6758588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 492
Target Start/End: Original strand, 6837010 - 6837194
Alignment:
Q  308 tttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttg 407  Q
    ||||| |||||||||| |||  ||||  | |||||||| ||||| |||||||||||  || | ||  |||| |||||||| ||| |  ||||  ||||||    
T  6837010 tttattttcttgcagatgctaaagaacttaaaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttg 6837109  T
Q  408 aaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagattt 492  Q
    ||||||| ||||||||||| ||||||||| | |||| | | || | ||||||||||  |||| ||||| ||||||||||| ||||    
T  6837110 aaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttcttctgataaattt 6837194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 338 - 436
Target Start/End: Original strand, 6752726 - 6752824
Alignment:
Q  338 aaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagt 436  Q
    |||||||| ||||| |||||||||||  || | ||  |||| |||||||||||| |  ||||| ||||||||||||| ||||||||||| |||||||||    
T  6752726 aaaattcttaatcttagtcattctcaggatttgaccgaaactccagacttttcatatatgcctaatcttgaaaagcttgtactcaaagactgtccaagt 6752824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 493
Target Start/End: Original strand, 6715503 - 6715688
Alignment:
Q  308 tttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttg 407  Q
    ||||| |||||||||| ||| ||||| || ||| |||| ||||| || ||||||| | || | ||  |||| |||||||||||| || ||||  ||||||    
T  6715503 tttattttcttgcagatgctagagaatctaaaagttcttaatctcagccattctcttgatttgactgaaacaccagacttttcatacatgccaaatcttg 6715602  T
Q  408 aaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttg 493  Q
    |||||||  ||||| |||| ||||||||| | |||  | | || | ||||||||||  |||  ||||||||||||||||| |||||    
T  6715603 aaaagcttatactcgaagactgtccaagtttgtctacggtctcccatagcattggatctctgcataaaattcttctgataaatttg 6715688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 6650870 - 6650930
Alignment:
Q  375 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaag 435  Q
    |||||||||||||||||  | ||||| ||||||||||||| ||||||||||| ||||||||    
T  6650870 aaaccccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 6650930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 436
Target Start/End: Original strand, 6675460 - 6675567
Alignment:
Q  329 gagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagatt 428  Q
    ||||| || |||||||| ||||| |||||||||||  || |  |  ||||||||||||||||| |||||||  || |||||||||| || |||||||| |    
T  6675460 gagaatctaaaaattcttaatcttagtcattctcaaaatttggctgaaaccccagacttttcatacttgcccaatattgaaaagctggtgctcaaagact 6675559  T
Q  429 gtccaagt 436  Q
    ||||||||    
T  6675560 gtccaagt 6675567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 493
Target Start/End: Complemental strand, 6532510 - 6532392
Alignment:
Q  375 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataa 474  Q
    |||||||| |||||||| |  ||||| ||||||||||| | ||||||||||| ||||||||| | |||| | | || | ||||||||||  |||| | ||    
T  6532510 aaaccccaaacttttcatatatgcctaatcttgaaaagttagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccaaaa 6532411  T
Q  475 aattcttctgatagatttg 493  Q
    | ||||||||||| |||||    
T  6532410 acttcttctgataaatttg 6532392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 436
Target Start/End: Original strand, 6728172 - 6728270
Alignment:
Q  338 aaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagt 436  Q
    |||||||| ||||| ||||||||||   || | ||  ||||||||||||||||  |||| ||| |||||||||||||||| |||||| | |||||||||    
T  6728172 aaaattcttaatcttagtcattctctggatttgactgaaaccccagacttttcctacttacctaatcttgaaaagctcgtgctcaaaaactgtccaagt 6728270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 510
Target Start/End: Complemental strand, 7885718 - 7885534
Alignment:
Q  326 ctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaag 425  Q
    |||| ||| ||||||||||| ||| | |||||||||||  |  | | ||| ||||| ||||||||||| |||||  ||||||||||| |  |||| || |    
T  7885718 ctggtgaagctgaaaattcttaatttgagtcattctcacaacttgagacatacccccgacttttcaaaattgccaaatcttgaaaagttaatacttaagg 7885619  T
Q  426 attgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 510  Q
    ||||||| ||| | |||  | ||||| |||  || ||||||||||| || |||||| | ||| ||||| |||||||||| |||||    
T  7885618 attgtcccagtttgtcttcggtttcttctaatataggacatctcaaaaagattcttttaataaatttgaaagattgtacaggcct 7885534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 493
Target Start/End: Original strand, 6796590 - 6796708
Alignment:
Q  375 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataa 474  Q
    |||||||||||||| || |||| ||  ||||||||||||| ||||| ||| ||||||||||| | |||  | | || | ||||||||||  |||  ||||    
T  6796590 aaaccccagactttacatacttaccaaatcttgaaaagctagtactaaaaaattgtccaagtttgtctacggtctcccatagcattggatctctacataa 6796689  T
Q  475 aattcttctgatagatttg 493  Q
    ||||||||| ||| |||||    
T  6796690 aattcttctcataaatttg 6796708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 6545726 - 6545665
Alignment:
Q  375 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagt 436  Q
    ||||||||||||||||| |  ||||| ||||||||||| | ||||||||||  |||||||||    
T  6545726 aaaccccagacttttcatatatgcctaatcttgaaaagatagtactcaaaggctgtccaagt 6545665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 307 - 503
Target Start/End: Complemental strand, 36214175 - 36213979
Alignment:
Q  307 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 406  Q
    |||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||| | || ||||| ||||||||| ||||| | |||    
T  36214175 atttctgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctgacaaagactccagatttttcaaacatgcctaacctt 36214076  T
Q  407 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    ||||| || ||||||| ||||||||||||  | |||||| |||| |  || |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  36214075 gaaaaactagtactcacagattgtccaagattgtctgaggtttcccacagtattggacatctcaataaagttcttctaataaatttggaagattgta 36213979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 510
Target Start/End: Original strand, 18935156 - 18935324
Alignment:
Q  342 ttctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagtctttc 441  Q
    |||| ||||| |||||||||||| | || | |||||||||  ||||||||||||||||  ||||||||||| |  ||||||||||||| |||||| | ||    
T  18935156 ttcttaatcttagtcattctcataacctgagacaaaccccgaacttttcaaacttgccgaatcttgaaaagttaatactcaaagattgcccaagtttgtc 18935255  T
Q  442 tgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 510  Q
       | |||||| ||| || |||| |||||| ||||||||| | ||| ||||| |||| ||||| |||||    
T  18935256 ctcggtttctcatagtataggacttctcaagaaaattcttttaataaatttgaaagactgtacaggcct 18935324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 510
Target Start/End: Complemental strand, 34724904 - 34724729
Alignment:
Q  335 ctgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaa 434  Q
    |||||| |||| ||||| |||||||||||| |  | | |||||| |||||||||||| |||||||  ||||||||||| |  ||||||||||||||||||    
T  34724904 ctgaaatttcttaatcttagtcattctcataacttgaaacaaacaccagacttttcatacttgccaaatcttgaaaagttaatactcaaagattgtccaa 34724805  T
Q  435 gtct-ttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 510  Q
     | | | || || |||||||||  || ||| ||||||| ||||||||  ||||| ||||| |||| ||||| |||||    
T  34724804 atttgtcctcag-tttctcctaatataggaaatctcaagaaaattctattgataaatttgaaagactgtacaggcct 34724729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 305 - 502
Target Start/End: Complemental strand, 9248 - 9051
Alignment:
Q  305 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 404  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| | |  || ||||||||||||||| | |||||| |||    
T  9248 atatttatggtcttgcagaggctggcgaagctgaaaattctcaatcttagtcattctcattatttgatgcataccccagacttttcatatttgcctaatc 9149  T
Q  405 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 502  Q
    |||||||||| |||||||||||||||||||   |  | ||| |||||| || ||||||| |||||  | |||| ||||| ||||||||||||||||||    
T  9148 ttgaaaagctagtactcaaagattgtccaatgttgaccgaggtttctcataccattggagatctcggtgaaatacttctaatagatttggaagattgt 9051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 307 - 503
Target Start/End: Original strand, 8877344 - 8877540
Alignment:
Q  307 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 406  Q
    ||||||||||||||||||| ||||||| || |||||||||||||| || || |||||| |||| |||||||| |||||||||| |||||||||| |||||    
T  8877344 atttatgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacacaaactccagactttttaaacttgcctaatctt 8877443  T
Q  407 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 503  Q
    |||||||| ||||||||||||||||| ||  |    |||||||| | ||  || |||| ||| |||||| ||||| ||||| |||||||||||||||    
T  8877444 gaaaagctagtactcaaagattgtccgaggttgatagagatttcgcatactataggacttctgaataaagttcttttgataaatttggaagattgta 8877540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 436
Target Start/End: Complemental strand, 8609 - 8502
Alignment:
Q  329 gagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagatt 428  Q
    ||||| || |||||||| ||||||||||||||||   || | ||  |||||||||||||| || |||||||  ||||||||||||| ||||||||| |||    
T  8609 gagaatctaaaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaatt 8510  T
Q  429 gtccaagt 436  Q
    ||||||||    
T  8509 gtccaagt 8502  T

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Target: scaffold0373 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 492
Target Start/End: Original strand, 9426 - 9610
Alignment:
Q  308 tttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttg 407  Q
    ||||| |||||||||| |||  ||||  | |||||||| ||||| |||||||||||  || | ||  |||| |||||||| ||| |  ||||  ||||||    
T  9426 tttattttcttgcagatgctaaagaacttaaaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttg 9525  T
Q  408 aaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagattt 492  Q
    ||||||| ||||||||||| ||||||||| | |||| | | || | ||||||||||  |||| ||||| ||||||||||| ||||    
T  9526 aaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttcttctgataaattt 9610  T

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Target: scaffold0813 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 5104 - 5044
Alignment:
Q  375 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaag 435  Q
    |||||||||||||||||  | ||||| ||||||||||||| ||||||||||| ||||||||    
T  5104 aaaccccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 5044  T

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Target: scaffold0286 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 6462 - 6522
Alignment:
Q  375 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaag 435  Q
    |||||||||||||||||  | ||||| ||||||||||||| ||||||||||| ||||||||    
T  6462 aaaccccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 6522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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