View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13219_low_4 (Length: 482)
Name: NF13219_low_4
Description: NF13219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13219_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 11627763 - 11627487
Alignment:
| Q |
16 |
caagaagttccaattcatcaagaatatcttcagtctcatgagcaacatctctgacttgcttaacccaaactttgagttcctcatcactctcttctaacgc |
115 |
Q |
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| T |
11627763 |
caagaagttccaattcatcaagaatatcttcagtctcatgagcaacatctctgacttgcttaacccaaactttgagttcctcgtcactttcttctaacgc |
11627664 |
T |
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| Q |
116 |
atcggcaacctttaagaaggcttttatgagctccaatttttctttcagatacaccacttctgcttcaacccctgtgagcaaattcacctcattctcgaat |
215 |
Q |
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| T |
11627663 |
atcagcaacctttaagaaagcttttatgagctccaatttttctttcagatacaccacttctgcttcaacccctgtgagcaaattcacctcattctcgaat |
11627564 |
T |
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| Q |
216 |
acaggtacaagcctttgcagaagaaaattcacagcctctgccatgatctctagattagtctaaataccctcagtgac |
292 |
Q |
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| T |
11627563 |
acaggtacaagcctttgcagaagaaaattcacagcctctgccatgatctctagatcagtcaaaataccctcagtgac |
11627487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 11649683 - 11649425
Alignment:
| Q |
16 |
caagaagttccaattcatcaagaatatcttcagtctcatgagcaacatctctgacttgcttaacccaaactttgagttcctcatcactctcttctaacgc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11649683 |
caagaagttccaattcatcaagaatatcttcagtctcatgagcaacatctctgacttgcttaacccaaactttgagttcctcatcactctcttctaatgc |
11649584 |
T |
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| Q |
116 |
atcggcaacctttaagaaggcttttatgagctccaatttttctttcagatacaccacttctgcttcaacccctgtgagcaaattcacctcattctcgaat |
215 |
Q |
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| T |
11649583 |
atctgcaacctttaagaaggctcctatgagttccaactgtcctttcagatacaccacttcgtcttcaacgccagcgagcaaattcatcttattctcaaat |
11649484 |
T |
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| Q |
216 |
acaggtacaagcctttgcagaagaaaattcacagc---ctctgccatgatctctagatt |
271 |
Q |
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| T |
11649483 |
acaggcacaagcctttgcagaagaaaactaactgcactctctgccatgatctcttgatt |
11649425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 11627340 - 11627304
Alignment:
| Q |
307 |
ctaatagcgacaaagtttgatatgctaaccagatttt |
343 |
Q |
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| T |
11627340 |
ctaatagagacaaactttgatatgctaaccagatttt |
11627304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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