View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1321_high_12 (Length: 273)
Name: NF1321_high_12
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1321_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 10869761 - 10869531
Alignment:
| Q |
14 |
agagagtagaaaaacaagaagatcgagacagtgaatctgcattgatgacgtacctgataagcagaagtggcgactccgaagacgaaatcagaagggaagt |
113 |
Q |
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| T |
10869761 |
agagagtagaaaaacaagaagatcgagacagtgaatctgcattgatgacgtacctgataagcagaagtggcgactccgaagacgaaatcagaagggaagt |
10869662 |
T |
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| Q |
114 |
cactgcgtgagacttcttctagtccttctttctcaaaaccgttttctctcagaaattcttctttctttaccattgtgaaactccttcaatgatcacagtt |
213 |
Q |
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| T |
10869661 |
cactgcgtgagacttcttctagtccttctttctcaaaaccgttttctctcagaaattcttctttctttaccattgtgaaactccttcaatgatcacagct |
10869562 |
T |
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| Q |
214 |
actctactttgcttctcttgtttgattatga |
244 |
Q |
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| T |
10869561 |
actctactttgcttctcttgtttgaatatga |
10869531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 10855949 - 10855789
Alignment:
| Q |
23 |
aaaaacaagaagatcgagacagtg--aatctgcattgatgacgtacctgataagcagaagtggcgactccgaagacgaaatcagaagggaagtcactgcg |
120 |
Q |
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||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |
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| T |
10855949 |
aaaaaaaacaagatcgagacagtgtgaatctgcattggtgacgtacctgataagcagaggtggcgactccgaagacgaagtcggaagggaagtcactgcg |
10855850 |
T |
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| Q |
121 |
tgagacttcttctagtccttctttctcaaaaccgttttctctcagaaattcttctttctttaccatt |
187 |
Q |
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| T |
10855849 |
tgagacttttt------gttctttctcaaaaccgttttctcttagaaactcttctttctttaccatt |
10855789 |
T |
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