View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1321_high_17 (Length: 251)

Name: NF1321_high_17
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1321_high_17
NF1321_high_17
[»] chr4 (2 HSPs)
chr4 (1-108)||(21261234-21261341)
chr4 (121-243)||(21262667-21262783)
[»] chr1 (3 HSPs)
chr1 (12-96)||(8102355-8102440)
chr1 (28-96)||(8103869-8103938)
chr1 (12-51)||(8099500-8099539)
[»] scaffold0097 (1 HSPs)
scaffold0097 (121-243)||(20425-20541)
[»] chr8 (3 HSPs)
chr8 (121-243)||(22530288-22530404)
chr8 (121-243)||(22534973-22535089)
chr8 (121-243)||(25992897-25993013)
[»] chr6 (1 HSPs)
chr6 (121-243)||(33092162-33092278)
[»] chr5 (1 HSPs)
chr5 (121-243)||(13190717-13190833)
[»] chr3 (1 HSPs)
chr3 (121-243)||(20984252-20984368)
[»] chr2 (1 HSPs)
chr2 (121-243)||(20716587-20716703)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 21261234 - 21261341
Alignment:
Q  1 ataagcagcttaaattttggttctgcataatttgcaactagtgtattttcctttggcaaattaaaccaaacaataataatatagaagaattatataggtt 100  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  21261234 ataagcaacataaattttggttctgcataatttgcaactagtgtattttcctttggcagattaaaccaaacaataataatatcgaagaattatataggtt 21261333  T
Q  101 acacgtaa 108  Q
    ||||||||    
T  21261334 acacgtaa 21261341  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 21262667 - 21262783
Alignment:
Q  121 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 219  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| ||||       ||||||||||||| ||  ||||||||||||||||||||||| ||    
T  21262667 ctcgtaataagatgcacaagtttaagaaagctttgggactcatacgaat-------tatatcataacatcgatcacttcctataatatgtttcattacct 21262759  T
Q  220 catttctaactctctccctatgct 243  Q
    ||||||||||||||||||||||||    
T  21262760 catttctaactctctccctatgct 21262783  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 8102355 - 8102440
Alignment:
Q  12 aaattttggttctgcataatttgcaactagtgtatttt-cctttggcaaattaaaccaaacaataataatatagaagaattatata 96  Q
    |||||||| |||| | |||||||||||||||||||||| ||||| |||  ||||||||||| ||||||||||||||| ||||||||    
T  8102355 aaattttgattcttcgtaatttgcaactagtgtattttcccttttgcagcttaaaccaaacgataataatatagaaggattatata 8102440  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 8103869 - 8103938
Alignment:
Q  28 taatttgcaactagtgtattttcc-tttggcaaattaaaccaaacaataataatatagaagaattatata 96  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||||| ||||||||    
T  8103869 taatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataatatagaaggattatata 8103938  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 8099539 - 8099500
Alignment:
Q  12 aaattttggttctgcataatttgcaactagtgtattttcc 51  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  8099539 aaattttggttcttcgtaatttgcaactagtgtattttcc 8099500  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 20425 - 20541
Alignment:
Q  121 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 219  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  20425 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 20517  T
Q  220 catttctaactctctccctatgct 243  Q
    | || |||||| |||| |||||||    
T  20518 cgttcctaactttctctctatgct 20541  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 22530288 - 22530404
Alignment:
Q  121 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 219  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  22530288 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 22530380  T
Q  220 catttctaactctctccctatgct 243  Q
    | || |||||| |||| |||||||    
T  22530381 cgttcctaactttctctctatgct 22530404  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 22534973 - 22535089
Alignment:
Q  121 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 219  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  22534973 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 22535065  T
Q  220 catttctaactctctccctatgct 243  Q
    | || |||||| |||| |||||||    
T  22535066 cgttcctaactttctctctatgct 22535089  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 25992897 - 25993013
Alignment:
Q  121 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 219  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  25992897 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 25992989  T
Q  220 catttctaactctctccctatgct 243  Q
    | || |||||| |||| |||||||    
T  25992990 cgttcctaactttctctctatgct 25993013  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 33092278 - 33092162
Alignment:
Q  121 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 219  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  33092278 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 33092186  T
Q  220 catttctaactctctccctatgct 243  Q
    | || |||||| |||| |||||||    
T  33092185 cgttcctaactttctctctatgct 33092162  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 13190717 - 13190833
Alignment:
Q  121 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 219  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  13190717 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 13190809  T
Q  220 catttctaactctctccctatgct 243  Q
    | || |||||| |||| |||||||    
T  13190810 cgttcctaactttctctctatgct 13190833  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 20984368 - 20984252
Alignment:
Q  121 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 219  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  20984368 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 20984276  T
Q  220 catttctaactctctccctatgct 243  Q
    | || |||||| |||| |||||||    
T  20984275 cgttcctaactttctctctatgct 20984252  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 20716587 - 20716703
Alignment:
Q  121 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 219  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  20716587 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 20716679  T
Q  220 catttctaactctctccctatgct 243  Q
    | || |||||| |||| |||||||    
T  20716680 cgttcctaactttctctctatgct 20716703  T

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