View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1321_high_18 (Length: 241)

Name: NF1321_high_18
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1321_high_18
NF1321_high_18
[»] chr8 (20 HSPs)
chr8 (36-164)||(38874632-38874760)
chr8 (43-111)||(10114482-10114550)
chr8 (43-111)||(27028824-27028892)
chr8 (37-114)||(28769345-28769422)
chr8 (56-112)||(35220731-35220787)
chr8 (52-111)||(43717946-43718005)
chr8 (37-114)||(11795079-11795156)
chr8 (37-76)||(7514565-7514604)
chr8 (52-111)||(30251463-30251522)
chr8 (37-80)||(35869824-35869867)
chr8 (84-142)||(7008633-7008690)
chr8 (37-111)||(8062511-8062585)
chr8 (60-118)||(21653091-21653149)
chr8 (43-111)||(2482858-2482924)
chr8 (37-102)||(9956832-9956897)
chr8 (37-114)||(12361179-12361256)
chr8 (41-114)||(30013209-30013282)
chr8 (56-109)||(44236834-44236887)
chr8 (46-142)||(6966881-6966976)
chr8 (38-70)||(31705073-31705105)
[»] chr5 (25 HSPs)
chr5 (37-111)||(39105451-39105525)
chr5 (52-111)||(4014433-4014492)
chr5 (41-142)||(32172644-32172744)
chr5 (37-105)||(28776980-28777048)
chr5 (37-111)||(2568645-2568719)
chr5 (37-111)||(9202757-9202831)
chr5 (37-95)||(12425558-12425616)
chr5 (56-142)||(41052874-41052959)
chr5 (46-111)||(7984965-7985030)
chr5 (37-110)||(37588370-37588443)
chr5 (37-97)||(7319393-7319453)
chr5 (43-111)||(41981874-41981942)
chr5 (44-86)||(4620187-4620229)
chr5 (37-111)||(6587116-6587190)
chr5 (56-114)||(7319014-7319072)
chr5 (57-111)||(10639960-10640014)
chr5 (52-102)||(24030419-24030469)
chr5 (37-78)||(12975334-12975375)
chr5 (37-118)||(36796708-36796789)
chr5 (37-110)||(37526209-37526282)
chr5 (43-108)||(40119880-40119945)
chr5 (37-114)||(41957457-41957534)
chr5 (43-111)||(1619083-1619150)
chr5 (43-91)||(32942611-32942659)
chr5 (52-120)||(42582914-42582982)
[»] chr7 (23 HSPs)
chr7 (37-111)||(40688995-40689069)
chr7 (37-107)||(47177623-47177693)
chr7 (52-109)||(20526448-20526505)
chr7 (37-126)||(38010701-38010790)
chr7 (37-111)||(47510116-47510190)
chr7 (37-101)||(6263382-6263446)
chr7 (37-97)||(27548250-27548310)
chr7 (43-102)||(12110353-12110412)
chr7 (52-111)||(48470046-48470105)
chr7 (43-95)||(44821952-44822004)
chr7 (43-110)||(752962-753029)
chr7 (52-95)||(43648242-43648285)
chr7 (43-102)||(45790443-45790502)
chr7 (52-114)||(6601369-6601431)
chr7 (52-110)||(33128755-33128813)
chr7 (38-108)||(39505944-39506014)
chr7 (46-95)||(33678776-33678825)
chr7 (43-108)||(46280284-46280349)
chr7 (37-142)||(48157099-48157203)
chr7 (40-72)||(28340892-28340924)
chr7 (37-109)||(30535550-30535622)
chr7 (59-111)||(36517588-36517640)
chr7 (52-92)||(47559629-47559669)
[»] chr2 (34 HSPs)
chr2 (37-111)||(18066115-18066189)
chr2 (37-114)||(18179246-18179323)
chr2 (37-126)||(22681179-22681268)
chr2 (37-118)||(15377752-15377834)
chr2 (37-110)||(11513885-11513958)
chr2 (37-93)||(8017421-8017477)
chr2 (45-98)||(6167305-6167358)
chr2 (38-71)||(29643465-29643498)
chr2 (37-110)||(39983329-39983402)
chr2 (45-102)||(42457943-42458000)
chr2 (52-104)||(26143656-26143708)
chr2 (43-111)||(40279190-40279258)
chr2 (56-111)||(3611232-3611287)
chr2 (39-114)||(6993730-6993805)
chr2 (52-111)||(9174817-9174876)
chr2 (37-72)||(25800816-25800851)
chr2 (43-78)||(33931612-33931647)
chr2 (43-102)||(42621393-42621452)
chr2 (37-111)||(26626860-26626934)
chr2 (37-111)||(29316784-29316858)
chr2 (56-110)||(33319822-33319876)
chr2 (52-114)||(40279409-40279471)
chr2 (37-102)||(680490-680555)
chr2 (46-111)||(1893290-1893355)
chr2 (37-110)||(9395117-9395190)
chr2 (43-108)||(12464485-12464550)
chr2 (37-78)||(16353848-16353889)
chr2 (52-109)||(16398116-16398173)
chr2 (59-140)||(34652017-34652097)
chr2 (54-111)||(35378541-35378598)
chr2 (37-98)||(41875675-41875736)
chr2 (43-111)||(750664-750731)
chr2 (37-113)||(938517-938593)
chr2 (37-69)||(42592326-42592358)
[»] chr1 (36 HSPs)
chr1 (36-114)||(4622079-4622157)
chr1 (43-111)||(7137007-7137075)
chr1 (37-111)||(9656637-9656711)
chr1 (38-111)||(28482242-28482315)
chr1 (43-111)||(27820346-27820414)
chr1 (43-111)||(34290229-34290297)
chr1 (52-112)||(35179141-35179201)
chr1 (43-111)||(45975683-45975751)
chr1 (57-111)||(51695504-51695558)
chr1 (52-97)||(4576807-4576852)
chr1 (37-118)||(7218076-7218157)
chr1 (38-111)||(31517749-31517822)
chr1 (52-109)||(39603842-39603899)
chr1 (38-114)||(27963376-27963452)
chr1 (37-114)||(28689458-28689537)
chr1 (42-102)||(38867849-38867909)
chr1 (38-109)||(25944420-25944491)
chr1 (59-102)||(38189773-38189816)
chr1 (39-114)||(39270431-39270506)
chr1 (44-114)||(2294905-2294975)
chr1 (55-109)||(16144981-16145035)
chr1 (37-111)||(16322836-16322910)
chr1 (56-110)||(41195203-41195257)
chr1 (37-107)||(49888754-49888824)
chr1 (38-111)||(6774976-6775048)
chr1 (59-108)||(7941615-7941664)
chr1 (37-78)||(25006076-25006117)
chr1 (41-102)||(27887136-27887197)
chr1 (37-114)||(30371135-30371212)
chr1 (43-111)||(2777885-2777953)
chr1 (37-73)||(15361700-15361736)
chr1 (43-111)||(24915060-24915128)
chr1 (37-109)||(25005808-25005880)
chr1 (43-111)||(42174848-42174916)
chr1 (37-97)||(44422686-44422746)
chr1 (37-73)||(48830123-48830159)
[»] chr6 (16 HSPs)
chr6 (37-114)||(4246397-4246474)
chr6 (52-111)||(34430470-34430529)
chr6 (52-102)||(835267-835317)
chr6 (37-111)||(24476589-24476663)
chr6 (45-111)||(31624085-31624151)
chr6 (37-102)||(9093574-9093639)
chr6 (89-122)||(27924601-27924634)
chr6 (45-122)||(28641747-28641824)
chr6 (37-102)||(31671092-31671157)
chr6 (43-111)||(2735062-2735130)
chr6 (43-111)||(3201956-3202024)
chr6 (59-143)||(4420652-4420735)
chr6 (43-95)||(9109276-9109328)
chr6 (43-79)||(9604842-9604878)
chr6 (43-107)||(24982698-24982762)
chr6 (63-111)||(31813174-31813222)
[»] chr4 (25 HSPs)
chr4 (43-111)||(17822874-17822942)
chr4 (43-102)||(42685417-42685476)
chr4 (44-99)||(942129-942184)
chr4 (37-126)||(9841053-9841141)
chr4 (43-102)||(16199999-16200058)
chr4 (37-110)||(20031736-20031810)
chr4 (37-114)||(2996560-2996637)
chr4 (52-109)||(55302251-55302308)
chr4 (58-102)||(825508-825552)
chr4 (37-80)||(24444025-24444068)
chr4 (37-111)||(1706609-1706683)
chr4 (37-115)||(27043835-27043913)
chr4 (37-95)||(35571656-35571714)
chr4 (36-74)||(52754586-52754624)
chr4 (84-126)||(53315360-53315402)
chr4 (37-87)||(53626763-53626813)
chr4 (37-110)||(36048520-36048593)
chr4 (37-114)||(40174550-40174627)
chr4 (37-102)||(51630098-51630163)
chr4 (52-97)||(52315220-52315265)
chr4 (44-112)||(11802528-11802596)
chr4 (37-97)||(29778782-29778842)
chr4 (41-93)||(32421096-32421148)
chr4 (37-69)||(36460573-36460605)
chr4 (43-95)||(49202638-49202690)
[»] chr3 (27 HSPs)
chr3 (57-125)||(33972729-33972797)
chr3 (43-110)||(44747418-44747485)
chr3 (44-107)||(50600191-50600254)
chr3 (59-109)||(466202-466252)
chr3 (45-114)||(2719463-2719532)
chr3 (37-90)||(33405197-33405250)
chr3 (52-108)||(21367669-21367725)
chr3 (37-113)||(34254815-34254891)
chr3 (37-80)||(2201115-2201158)
chr3 (59-114)||(16790384-16790439)
chr3 (52-122)||(2128256-2128326)
chr3 (37-95)||(5436246-5436304)
chr3 (45-111)||(28622008-28622074)
chr3 (53-95)||(32582747-32582789)
chr3 (37-111)||(36783343-36783417)
chr3 (56-142)||(37273140-37273225)
chr3 (52-102)||(41633362-41633412)
chr3 (37-111)||(52618990-52619064)
chr3 (37-102)||(14548739-14548804)
chr3 (37-78)||(21865563-21865604)
chr3 (37-113)||(25182994-25183071)
chr3 (43-108)||(30443886-30443951)
chr3 (57-113)||(901931-901987)
chr3 (37-97)||(14145899-14145959)
chr3 (43-111)||(20880469-20880537)
chr3 (43-95)||(39602235-39602287)
chr3 (59-111)||(45541580-45541632)
[»] scaffold0221 (1 HSPs)
scaffold0221 (52-109)||(22233-22290)
[»] scaffold0024 (1 HSPs)
scaffold0024 (52-101)||(21304-21353)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 38874632 - 38874760
Alignment:
Q  36 cttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874632 cttttcatataagctctaagctgttttcataagctattttggagaacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctat 38874731  T
Q  136 aagctcttcggaacagtcttacctatgct 164  Q
    ||||||||||||||||||||||| |||||    
T  38874732 aagctcttcggaacagtcttaccaatgct 38874760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 10114482 - 10114550
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| |||||||||||||| |||||| ||||| |||||||||||||||||| |||| ||| ||||    
T  10114482 tataagctataagctgttttcattagctatattggagaacatatgaaaataagctgaaaacagcatatg 10114550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 27028824 - 27028892
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| ||||||||||||||||||||| ||||| | | |||||||||||||| |||||||||||||    
T  27028824 tatatgctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatg 27028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 28769422 - 28769345
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |   |||| ||||||||| |||| | |||||||||    
T  28769422 ttttcttataagctataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaacttatggac 28769345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 35220787 - 35220731
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgg 112  Q
    |||||||||||||||||| |||| | | ||| |||||||||||||||||||||||||    
T  35220787 ctgttttcataagctattctggagagcttataaaaataagctaaaaatagcttatgg 35220731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 43718005 - 43717946
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||| |||||||||| ||||| ||| ||||||| ||||||||||| ||||||||    
T  43718005 taagctgtttgcataagctatcttggagaacttatgaaagtaagctaaaaacagcttatg 43717946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 11795079 - 11795156
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||| | ||||||| |||||||||||||| |||| | | |||| ||||||||| |||| || ||||||||    
T  11795079 ttttcatataagttataagctgatttcataagctattatggagagcttatggaaataagctgaaaacaggttatggac 11795156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 7514565 - 7514604
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttg 76  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  7514565 ttttcatataagctacaagctgttttcataagctattttg 7514604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 30251522 - 30251463
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||||||||||||| |||||  || ||||||||||||||  ||| ||||||||    
T  30251522 taagctgttttcataagctatcttggaccacttatgaaaataagctgtaaaaagcttatg 30251463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 35869824 - 35869867
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggata 80  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||    
T  35869824 ttttcatataagctataagttgttttcataagctattgtggata 35869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 7008633 - 7008690
Alignment:
Q  84 tatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 142  Q
    ||||||||||||||||||||| |||| |||| ||| ||| | |||||||||||||||||    
T  7008633 tatgaaaataagctaaaaatatcttaaggacatgtcata-ggttgtttctataagctct 7008690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 8062511 - 8062585
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| |||| |||| ||||||||||| || || |   ||||||||||||||  ||||||||||||    
T  8062511 ttttcatataagctataagatgttctcataagctatcttagagagtttatgaaaataagctggaaatagcttatg 8062585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 21653091 - 21653149
Alignment:
Q  60 tttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgt 118  Q
    |||||| |||||| ||||| | | |||||||||||||| ||||||||||||| ||||||    
T  21653091 tttcattagctatcttggagagcttatgaaaataagctgaaaatagcttatgaacgtgt 21653149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 2482858 - 2482924
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| ||||||||||||||  ||||| ||||||||| |||  ||||||||| |||| ||||||||    
T  2482858 tataagctataagctgttttcat--gctatcttggataacttatagaaataagctgaaaacagcttatg 2482924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 9956897 - 9956832
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| |||||| | |||| ||||||||||| |||| ||||| ||| |||||||||||||| ||||    
T  9956897 ttttcctataagttataagttgttttcataatctatcttggagaacttatgaaaataagctgaaaa 9956832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 12361179 - 12361256
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| ||||||||||||||||| ||||  ||| | |  ||| ||||||| | |||| |||||||||||    
T  12361179 ttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatggac 12361256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 30013209 - 30013282
Alignment:
Q  41 catataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||| |||||||||||||||||||||  || | |||  ||| ||||||||| ||||||| ||| ||||    
T  30013209 catataagctataagctgttttcataagctatcctgtagaactaatggaaataagctgaaaatagtttagggac 30013282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 44236887 - 44236834
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||||||||||||||| ||||| | | |||||||||||||| |||||| ||||    
T  44236887 ctgttttcataagctatattggagagcttatgaaaataagctgaaaataactta 44236834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 6966881 - 6966976
Alignment:
Q  46 aagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 142  Q
    ||||| |||||||||||||| ||| || ||||  | | |||||||||||||  |||||||||||  ||| ||||||| | ||||||| |||||||||    
T  6966881 aagctataagctgttttcattagccatcttggggagcttatgaaaataagcggaaaatagcttaatgacatgttataag-ttgtttcaataagctct 6966976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 31705073 - 31705105
Alignment:
Q  38 tttcatataagctctaagctgttttcataagct 70  Q
    ||||||||||||| |||||||||||||||||||    
T  31705073 tttcatataagctataagctgttttcataagct 31705105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 39105451 - 39105525
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| |||||||| ||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  39105451 ttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatg 39105525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 4014492 - 4014433
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||| |||| ||||||||    
T  4014492 taagctgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttatg 4014433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 32172644 - 32172744
Alignment:
Q  41 catataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagct 140  Q
    |||||||||| |||||||||||||||||||||  || | |||  ||| ||||||||| ||||| |||||||||| ||| ||| | ||||||| |||||||    
T  32172644 catataagctataagctgttttcataagctatcatgaagaactaatggaaataagctgaaaatggcttatggacatgtcataag-ttgtttccataagct 32172742  T
Q  141 ct 142  Q
    ||    
T  32172743 ct 32172744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 28776980 - 28777048
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatag 105  Q
    ||||| |||| ||| ||||||||||||||||||||| ||||| |||  ||||||||||| |||||||||    
T  28776980 ttttcgtataggctataagctgttttcataagctatcttggagaactaatgaaaataagataaaaatag 28777048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 2568645 - 2568719
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| |||||||| |||| ||||||||||||||||  |||| | |  |||||||||||||||||||| ||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatg 2568719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 9202831 - 9202757
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||  ||||||||||||||||| ||| ||| | ||| ||||||||||||||  ||| ||||||||    
T  9202831 ttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaataagctggaaacagcttatg 9202757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 12425558 - 12425616
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    ||||| |||||||| ||||||||||||| ||||||| ||||| ||| ||||||||||||    
T  12425558 ttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataag 12425616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 41052874 - 41052959
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 142  Q
    |||||||||||| |||||||||| | | |||| ||||||| ||||||||| ||||| || ||| ||| | |||||||||||||||||    
T  41052874 ctgttttcataacctattttggagagcttatggaaataagttaaaaatagtttatgaacatgtcata-ggttgtttctataagctct 41052959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 7984965 - 7985030
Alignment:
Q  46 aagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| |||||| |||||||||||||| ||||| ||  |||||||||||||| |||| ||||||||    
T  7984965 aagctataagcttttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatg 7985030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 37588443 - 37588370
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||||| |||| |||||||||||| |||| |||| | | |||| ||||||||| |||| |||||||    
T  37588443 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttat 37588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 7319393 - 7319453
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    |||||||||||||| ||| |||||||| |||||||| ||||| ||| ||| ||||||||||    
T  7319393 ttttcatataagctataaactgttttcgtaagctatcttggagaacttataaaaataagct 7319453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 41981942 - 41981874
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || |||||||||||||||| ||||||| || ||| || |||||||||||||||  ||||||||    
T  41981942 tataaactataagctgttttcataaactatttttgagaacttacgaaaataagctaaaagcagcttatg 41981874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 4620187 - 4620229
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatat 86  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  4620187 ataagctataagctgttttcataagctatgttggagaacatat 4620229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 6587190 - 6587116
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| |||||||| |||| ||||||||||||||||  |||| ||| | ||||||||||||  ||| ||||||||    
T  6587190 ttttcgtataagctataagttgttttcataagctatagtggagaacttgtgaaaataagctgtaaacagcttatg 6587116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 7319072 - 7319014
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||||||||||||| ||||| ||| |||||||||||||| | || | |||||||||    
T  7319072 ctgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggac 7319014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 10639960 - 10640014
Alignment:
Q  57 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||| ||| ||||||||    
T  10639960 tgtttacataaactattttggagaacttatgaaaataagctagaaaaagcttatg 10640014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 24030469 - 24030419
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||| |||||| ||||||||| || |||||| |||||||||||||||||||    
T  24030469 taagttgtttttataagctatattagataacttatgaaaataagctaaaaa 24030419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 12975334 - 12975375
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttgga 78  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  12975334 ttttcatataagctataagctgtgttcataagctatcttgga 12975375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 36796789 - 36796708
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgt 118  Q
    |||||| ||||||| ||||||||||||||  ||||| ||||| ||| ||  ||||||| || |||| |||||||| ||||||    
T  36796789 ttttcacataagctataagctgttttcatttgctatattggaaaacttacaaaaataaactgaaaacagcttatgaacgtgt 36796708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 37526282 - 37526209
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||||| |||| |||||||||||| | || |||| | | |||| ||||||||| |||| |||||||    
T  37526282 ttttcatataagctataagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagcttat 37526209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 40119945 - 40119880
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||||||| ||| |||||||||||||| || ||||||||| | ||||||||| |||| || |||||    
T  40119945 tataagctataacctgttttcataagcgatcttggataacttgtgaaaataatctaagaacagctt 40119880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 41957534 - 41957457
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||| |||| | |||||||||||||||||||||  | || ||| |||||||||||| | |||| | |||||||||    
T  41957534 ttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggac 41957457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 1619083 - 1619150
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| |||||||||||||||||| | |||||| | ||||||||||| |||| |||| || |||||    
T  1619083 tataagctataagctgttttcataagcca-tttggagagcatatgaaaatcagctgaaaacagtttatg 1619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 32942611 - 32942659
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaa 91  Q
    |||| ||| ||||||||||||||||||||| ||||| ||| ||||||||    
T  32942611 tatatgctataagctgttttcataagctatcttggagaacttatgaaaa 32942659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 42582914 - 42582982
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgtta 120  Q
    |||||||||||  |||||||| ||||| ||| |||||||||||||| |||| || ||||| || |||||    
T  42582914 taagctgtttttgtaagctatattggagaacttatgaaaataagctcaaaacagtttatgaacatgtta 42582982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 40689069 - 40688995
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| |||||||| ||||||||||||  |||||||| |||||||||||||| |||| ||||||||    
T  40689069 ttttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagctcaaaacagcttatg 40688995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 47177623 - 47177693
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 107  Q
    |||||||||||||| ||||||||||||| ||||||| ||||| ||  |||||||||||||||||| |||||    
T  47177623 ttttcatataagctataagctgttttcaaaagctatcttggagaatttatgaaaataagctaaaagtagct 47177693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 20526448 - 20526505
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||||||||||||||||||||||||| |||  |||||||||||||||||| ||||||    
T  20526448 taagctgttttcataagctattttggagaactaatgaaaataagctaaaaacagctta 20526505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 38010701 - 38010790
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtt 126  Q
    |||||||||||||| |||||||||||||||| ||||  | || ||| |||| |||||||||||||| |||||||| || |||||| ||||    
T  38010701 ttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgtt 38010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 47510116 - 47510190
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| |||||||||||||||| || | ||||| ||| | ||||||||||||||||  ||||||||    
T  47510116 ttttcatataagctgtaagctgttttcataaactctcttggacaacttgtgaaaataagctaaaaggagcttatg 47510190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 6263446 - 6263382
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaa 101  Q
    |||||||||||| | ||||||| |||||||||||||| |||| | |||||| |||||||||||||    
T  6263446 ttttcatataagttataagctgatttcataagctattatggagagcatatggaaataagctaaaa 6263382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 27548250 - 27548310
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||| |||| | |||||||    
T  27548250 ttttcatttaagctataagctgttttcataagctatcttggataacttatggagataagct 27548310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 12110353 - 12110412
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||| ||||||||||||||||||||| ||| | ||| ||||||||||| |||||||    
T  12110353 tataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaa 12110412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 48470046 - 48470105
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||    
T  48470046 taagttgttttcataagctattttgaataacttatgaacataagctcaaaaaagcttatg 48470105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 44821952 - 44822004
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||| | |||||||||||||||||||||| |||| ||| ||||||||||||    
T  44821952 tataagttataagctgttttcataagctattctggagaacttatgaaaataag 44822004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 752962 - 753029
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||| ||||||||||| |||| |||| ||||  | ||||||||||| ||||||||| |||||||    
T  752962 tataagctataagctgttttgataaactatcttggggagcatatgaaaattagctaaaaacagcttat 753029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 43648242 - 43648285
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataag 95  Q
    ||||||||||||||||||||| ||||| || |||||||||||||    
T  43648242 taagctgttttcataagctatcttggagaaaatatgaaaataag 43648285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 45790502 - 45790443
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||| |||| |||||| |||| |||| ||||||||| |||||||||||||| ||||    
T  45790502 tataagctataagttgtttttataaactatattggataacttatgaaaataagctgaaaa 45790443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 6601369 - 6601431
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||||||| |||||||||| ||||   | |||||||||||||| | ||||||||||||||    
T  6601369 taagctgtttttataagctattctggagtgcttatgaaaataagctgagaatagcttatggac 6601431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 33128755 - 33128813
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||| ||||| |||| ||||| ||| | ||||||||||||||||| |||||||    
T  33128755 taagctgtttacataaactatattggagaacttgtgaaaataagctaaaaaaagcttat 33128813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 39505944 - 39506014
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    ||||||||||||  |||| ||||||||||||||||| |||| |   |||| ||||||||| ||||||||||    
T  39505944 tttcatataagcattaagttgttttcataagctattctggagagtttatggaaataagctgaaaatagctt 39506014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 33678776 - 33678825
Alignment:
Q  46 aagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    ||||| ||||||||||||||||||||| ||||| ||| | ||||||||||    
T  33678776 aagctataagctgttttcataagctatcttggaaaacttgtgaaaataag 33678825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 46280349 - 46280284
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||| ||| ||||||||||| ||||||||| ||||| ||| |||||||||| ||| |||| |||||    
T  46280349 tatatgctataagctgtttttataagctatattggagaacttatgaaaataggctgaaaaaagctt 46280284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 48157203 - 48157099
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 136  Q
    |||| ||||||||| |||  |||||||| ||||||||  ||| | | |||| ||||||||| |||| ||||||||||| ||  ||| | |||||||||||    
T  48157203 ttttaatataagctataatttgttttcacaagctattcgggagatcttatggaaataagctgaaaacagcttatggacatggcataag-ttgtttctata 48157105  T
Q  137 agctct 142  Q
    ||||||    
T  48157104 agctct 48157099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 28340924 - 28340892
Alignment:
Q  40 tcatataagctctaagctgttttcataagctat 72  Q
    ||||||||||| |||||||||||||||||||||    
T  28340924 tcatataagctataagctgttttcataagctat 28340892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 30535550 - 30535622
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||| ||||| || |||||||||| |||||||||| ||  | ||||||||||||||| || |||| ||||||    
T  30535550 ttttcgtataatctataagctgtttccataagctatcttatagaacatatgaaaataacctgaaaacagctta 30535622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 36517588 - 36517640
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||||||||||    
T  36517588 ttttcataagctatcttggagaaattatgaaaataaactgaaaatagcttatg 36517640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 47559669 - 47559629
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaat 92  Q
    ||||||||||||||||| ||||||||| ||| |||||||||    
T  47559669 taagctgttttcataagttattttggagaacttatgaaaat 47559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 18066115 - 18066189
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| ||||||||||||||||||||| ||||| ||| || ||||||||| | |||||||||||||    
T  18066115 ttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatg 18066189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 18179323 - 18179246
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| ||||||| |||||||||||||  |||| ||| || ||||||||||| ||||||||| ||||||    
T  18179323 ttttcatataagctataagctgctttcataagctatcctggagaacttacgaaaataagctgaaaatagctaatggac 18179246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 22681268 - 22681179
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtt 126  Q
    |||||||||||||| |||||||||||||||| ||||  | || ||| |||| |||||||||||||| |||||||| || |||||| ||||    
T  22681268 ttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgtt 22681179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 15377752 - 15377834
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagc-taaaaatagcttatggacgtgt 118  Q
    |||||||||||| | |||||||||||||||||||||| ||   | | ||||||||||| | ||||||||||||||||||||||    
T  15377752 ttttcatataagttataagctgttttcataagctattctgaggagcttatgaaaataaacttaaaaatagcttatggacgtgt 15377834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 11513885 - 11513958
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||||| |||| ||||||||||||||||  |||| ||| | || ||||||||| ||||||||||||    
T  11513885 ttttcatataagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaatagcttat 11513958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 8017421 - 8017477
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaata 93  Q
    |||||||||||||| ||| ||||||||||||||||| ||||| ||| ||||||||||    
T  8017421 ttttcatataagctgtaaactgttttcataagctatcttggagaacttatgaaaata 8017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 6167358 - 6167305
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagcta 98  Q
    |||||| ||||||||||| ||||||||||||||| ||| |||| ||||||||||    
T  6167358 taagctataagctgtttttataagctattttggagaacttatggaaataagcta 6167305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 29643498 - 29643465
Alignment:
Q  38 tttcatataagctctaagctgttttcataagcta 71  Q
    ||||||||||||||||||||||||||||||||||    
T  29643498 tttcatataagctctaagctgttttcataagcta 29643465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 39983329 - 39983402
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||||| |||| ||||||||||||||||  |||| | |  |||||||||| || ||||||||||||    
T  39983329 ttttcatataagctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagcttat 39983402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 42457943 - 42458000
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||| |||||| |||||||||||| || || |||||||||||||||||| ||||    
T  42457943 taagctcttagctgtattcataagctatcttagagaacatatgaaaataagctgaaaa 42458000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 26143708 - 26143656
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaata 104  Q
    ||||||||||||||||||||  ||||| ||| |||||||||||||| ||||||    
T  26143708 taagctgttttcataagctaacttggagaacttatgaaaataagctgaaaata 26143656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 40279190 - 40279258
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||| | |||| |||||||||||||||| ||||| ||| ||||||||| |||| ||||||| |||||    
T  40279190 tataagatataagttgttttcataagctatgttggagaacttatgaaaattagctgaaaatagtttatg 40279258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 3611232 - 3611287
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||| ||||||| ||||| ||| ||||||||||||||||||| || |||||    
T  3611232 ctgttttcacaagctatcttggagaacttatgaaaataagctaaaaacagtttatg 3611287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 6993805 - 6993730
Alignment:
Q  39 ttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||| || | ||||||||||||||||  | || | | ||||||||||||||||||||  |||||||||    
T  6993805 ttcatataagctataggttgttttcataagctatgcttgagagcttatgaaaataagctaaaaatgacttatggac 6993730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 9174817 - 9174876
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||||||||||||| ||  | | | |||||||||||||| |||||||||||||    
T  9174817 taagctgttttcataagctatcttacagagcttatgaaaataagctgaaaatagcttatg 9174876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 25800816 - 25800851
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctat 72  Q
    |||||||||||||| |||||||||||||||||||||    
T  25800816 ttttcatataagctataagctgttttcataagctat 25800851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 33931647 - 33931612
Alignment:
Q  43 tataagctctaagctgttttcataagctattttgga 78  Q
    |||||||| |||||||||||||||||||||||||||    
T  33931647 tataagctataagctgttttcataagctattttgga 33931612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 42621452 - 42621393
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||| ||||||||||||||||| |||| |||| ||| | |||||||||||| ||||    
T  42621452 tataagctataagctgttttcataagttattctggagaacttgtgaaaataagctgaaaa 42621393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 26626860 - 26626934
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| ||||||||  |||||||||||||||||||| ||| | ||| ||||||||||| || |||| || |||||    
T  26626860 ttttcgtataagctagaagctgttttcataagctatcttgcagaacttatgaaaataacctgaaaacagattatg 26626934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 29316858 - 29316784
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||| |||| || |||||||||||||| |||||| ||||| ||| |||| ||||||||| |||| | ||||||    
T  29316858 ttttcacataatctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatg 29316784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 33319876 - 33319822
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||| |||| ||||| ||| |||||||||||||| |||| |||||||    
T  33319876 ctgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttat 33319822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 40279409 - 40279471
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||| | |||| || ||||||||    
T  40279409 taagttgttttcataagctatattggagaacttatgaaaataagttgaaaacagtttatggac 40279471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 680490 - 680555
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| |||||||| |||||| |||||||||||||| ||| | ||| | |||||||||||| ||||    
T  680490 ttttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaa 680555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 1893355 - 1893290
Alignment:
Q  46 aagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| ||||||||||||  ||||||| ||||| ||| | |||||||||||| |||||| ||||||    
T  1893355 aagctataagctgttttcggaagctatcttggagaacttgtgaaaataagctgaaaataacttatg 1893290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 9395117 - 9395190
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    ||||||||||| || |||||||||||||| || |||| || | | | |||||||||||||| |||| |||||||    
T  9395117 ttttcatataatctataagctgttttcattagttattctgtagagcttatgaaaataagctgaaaacagcttat 9395190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 12464550 - 12464485
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||| ||| |||||| |||||||||||||| ||||| ||| | |||||||||||| |||| |||||    
T  12464550 tatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaaaagctt 12464485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 16353848 - 16353889
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttgga 78  Q
    |||||||||||||| ||||||||||| ||||||||| |||||    
T  16353848 ttttcatataagctataagctgtttttataagctatcttgga 16353889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 16398116 - 16398173
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||||| |||||||||| ||| ||||| ||| |||||||||||||| |||| ||||||    
T  16398116 taagctattttcataagttatgttggagaacttatgaaaataagctgaaaacagctta 16398173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 34652097 - 34652017
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagct 140  Q
    |||||||||||||| ||||| | | |||| ||||||| | |||| ||||||||||| ||| ||| | |||||||||||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataag-ttgtttctataagct 34652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 35378598 - 35378541
Alignment:
Q  54 agctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||| ||||| || ||||||| | |||||||||||||| |||||| ||||||    
T  35378598 agctgttttcgtaagcaatcttggatagcttatgaaaataagctgaaaataacttatg 35378541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 41875736 - 41875675
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagcta 98  Q
    ||||| |||||||| ||||||||||||||||||||| ||||  | | || ||||||||||||    
T  41875736 ttttcgtataagctgtaagctgttttcataagctatcttggtgagcttaagaaaataagcta 41875675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 750664 - 750731
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| | |||||||| |||||||||| ||||| ||| |||| ||||||||| |||| ||||||||    
T  750664 tataagctatgagctgttt-cataagctatcttggagaacttatgcaaataagctcaaaacagcttatg 750731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 938593 - 938517
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgga 113  Q
    |||||||||||||| ||||| || |||||||||||| || || | | | |||||||||| | ||||| |||||||||    
T  938593 ttttcatataagctataagcggtattcataagctatcttagagagcttctgaaaataagtttaaaatggcttatgga 938517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 42592326 - 42592358
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagc 69  Q
    |||||||||||||| ||||||||||||||||||    
T  42592326 ttttcatataagctataagctgttttcataagc 42592358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 4622079 - 4622157
Alignment:
Q  36 cttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||||||||||| |||||||||| |||| ||||| ||||| | | | ||||||||||||||||| |||||||||||    
T  4622079 cttttcatataagctataagctgtttccatatgctatcttggagagcttgtgaaaataagctaaaaacagcttatggac 4622157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 7137075 - 7137007
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||| ||||||    
T  7137075 tataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatg 7137007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 9656637 - 9656711
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| |||||||| ||||||||||||  ||||| |  |||||||||||||| |||| ||||||||    
T  9656637 ttttcatataagctataagctgtgttcataagctatcctggatgaattatgaaaataagctcaaaacagcttatg 9656711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 28482315 - 28482242
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||||| ||||||||||| ||||| ||| ||||| | | || ||||||||||||||||||| |||||    
T  28482315 tttcatataagctataagctgtttttataagttatcttggagagcttacgaaaataagctaaaaatagtttatg 28482242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 27820414 - 27820346
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| || |||||||| ||||||||| ||||| ||  |||||||||||||| |||||||||||||    
T  27820414 tataagctatatgctgtttttataagctatcttggagaatttatgaaaataagctgaaaatagcttatg 27820346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 34290229 - 34290297
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| ||||||||||||||||||||| ||| | ||| |||||||||||||| |||| | ||||||    
T  34290229 tataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatg 34290297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 35179141 - 35179201
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgg 112  Q
    ||||||||||||||||| |||| |||| ||| |||||||||||||| |||| |||||||||    
T  35179141 taagctgttttcataagttattatggagaacttatgaaaataagctgaaaacagcttatgg 35179201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 45975683 - 45975751
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||  |||||||||||||||||||| ||||| ||  |||||||||||||| |||| ||||||||    
T  45975683 tataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatg 45975751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 51695558 - 51695504
Alignment:
Q  57 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||||| ||||| ||  |||||||||||||| |||||||||||||    
T  51695558 tgttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttatg 51695504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 4576807 - 4576852
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  4576807 taagctgttttcataagctatattgaataacttatgaaaataagct 4576852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 7218157 - 7218076
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgt 118  Q
    |||||||||||||| |||| ||||||||||| ||||  |||| ||| |||||||||||| | |||| ||||| || ||||||    
T  7218157 ttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtgaacgtgt 7218076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 31517822 - 31517749
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||||| |||||||| ||||||| || | ||||| | | |||||||||||||| |||| ||||||||    
T  31517822 tttcatataagctataagctgtcttcataatctgtcttggagagcttatgaaaataagctgaaaacagcttatg 31517749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 39603899 - 39603842
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||| |||||| ||| ||||||||||||| | |||||||||||||| |||||||||||    
T  39603899 taagttgtttttatatgctattttggatagcttatgaaaataagctgaaaatagctta 39603842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 27963452 - 27963376
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||| ||| |||||| ||||||||||||||||| |||| | | |||  |||||||||||||| | |||||||||    
T  27963452 tttcataaaagttctaagttgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggac 27963376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 28689537 - 28689458
Alignment:
Q  37 ttttcatataagctctaagctgttttcata--agctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| |||| ||||||||||  |||||| ||||| | | |||||||||||||| |||| | |||||||||    
T  28689537 ttttcatataagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggac 28689458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 38867909 - 38867849
Alignment:
Q  42 atataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||||||| ||| ||||||||||||| ||| ||| | ||| |||||||||||||||||||    
T  38867909 atataagctttaaactgttttcataagttatcttgaagaacttatgaaaataagctaaaaa 38867849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 25944420 - 25944491
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||||| |||| | ||||| |||||||||||||||  ||||| |  |||||||||||||| |||||||||||    
T  25944420 tttcatgtaagttataagcggttttcataagctatcctggattaattatgaaaataagctgaaaatagctta 25944491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 38189773 - 38189816
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||    
T  38189773 ttttcttaagctattttggataacttatgaagataagctaaaaa 38189816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 39270506 - 39270431
Alignment:
Q  39 ttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||| | ||||||||||||||||||||   | || | |||||||||||||| | |||| |||||||||||    
T  39270506 ttcatataagatataagctgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggac 39270431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 2294905 - 2294975
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||| |||||| ||||||||| |||| ||||| ||| || ||||||||| | |||| |||||||||||    
T  2294905 ataagctataagctattttcataaactatcttggagaacttacgaaaataaggtgaaaacagcttatggac 2294975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 16145035 - 16144981
Alignment:
Q  55 gctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||| |||||||| |||| ||| ||||| ||||||||||| ||||||||||||||    
T  16145035 gctgctttcataaactatcttgaataacttatgaaaataacctaaaaatagctta 16144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 16322836 - 16322910
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| ||| | ||||||||||||||| ||||||||| | | | |||| |||||||||||||| | ||||||    
T  16322836 ttttcatagaagttataagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 41195257 - 41195203
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||| |||| ||||| ||| |||||||||||||| |||| |||||||    
T  41195257 ctgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttat 41195203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 49888754 - 49888824
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 107  Q
    ||||| |||||||| | || |||||||||||||||| || || ||| |||||||||||||  |||||||||    
T  49888754 ttttcgtataagctattagttgttttcataagctatcttagagaacttatgaaaataagccgaaaatagct 49888824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 6774976 - 6775048
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||  |||||||||||| ||||||| ||| | |||||| | ||||||||| |||| ||||||||    
T  6774976 tttcatataagcta-aagctgttttcacaagctatcttgaagaacataagtaaataagctgaaaacagcttatg 6775048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 7941615 - 7941664
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||||||||||||||| ||| ||| |||||||||||| | ||||||||||    
T  7941615 ttttcataagctatttcggagaacttatgaaaataagttgaaaatagctt 7941664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 25006117 - 25006076
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttgga 78  Q
    |||||||||||||| |||| |||||||||||||||| |||||    
T  25006117 ttttcatataagctataagttgttttcataagctatcttgga 25006076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 27887197 - 27887136
Alignment:
Q  41 catataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||||| |||| ||||||||||| ||||  |||| | ||||| |||||||||||||||    
T  27887197 catataagctataagttgttttcataaactatcatggagagcatataaaaataagctaaaaa 27887136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 30371135 - 30371212
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| |||| ||||||||||||  |||||||| | | |||  ||||||||| |||| | |||||||||    
T  30371135 ttttcatataagctataagttgttttcataagacattttggagagcgtattgaaataagctgaaaacaacttatggac 30371212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 2777885 - 2777953
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| ||||||||||| ||||| ||  ||||| ||| |||||||||||||| ||||  |||||||    
T  2777885 tataagctataagctgttttaataagttaacttggagaacttatgaaaataagctgaaaacggcttatg 2777953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 15361700 - 15361736
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctatt 73  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  15361700 ttttcatataagctataagctgttttcataagatatt 15361736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 24915128 - 24915060
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| ||||||||||||||||||| | ||||| ||| | |||||||||| | |||| ||||||||    
T  24915128 tatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatg 24915060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 25005880 - 25005808
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||||||||||||| |||| ||||||||||||||||  |||| | | ||| |||| ||||| |||||| ||||    
T  25005880 ttttcatataagctataagttgttttcataagctatcctggagagcttataaaaacaagcttaaaatatctta 25005808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 42174848 - 42174916
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| |||| |||||| ||||| ||| ||||| ||| |||||||||||| |||||| ||||||||    
T  42174848 tatatgctataagttgtttttataagttatattggagaacttatgaaaataagttaaaaacagcttatg 42174916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 44422686 - 44422746
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    |||||||||||||| |||||| |||| |||||||||  |||| | | ||||||||||||||    
T  44422686 ttttcatataagctataagctatttttataagctatcctggagagcttatgaaaataagct 44422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 48830159 - 48830123
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctatt 73  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  48830159 ttttcatataagctataaactgttttcataagctatt 48830123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 4246397 - 4246474
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||||||| || |||||||||||||||||||||| |||| | ||||| |||||||| | |||| |||||||||||    
T  4246397 ttttcatataatctataagctgttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggac 4246474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 34430529 - 34430470
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| |||||||||||||||| ||||| ||  |||||||||||||| |||| ||||||||    
T  34430529 taaggtgttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatg 34430470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 835317 - 835267
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| ||||||||||||||| ||||| ||| |||||||||||||| ||||    
T  835317 taagcagttttcataagctatcttggagaacttatgaaaataagctgaaaa 835267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 24476589 - 24476663
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||  ||||| ||||| ||||||||||||||| |||  ||  ||||||| | |||||||||||||    
T  24476589 ttttcatataagcgataagcagttttgataagctattttggagaacggattgaaataagttgaaaatagcttatg 24476663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 31624085 - 31624151
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||| ||||||||||||||| ||||| ||||| ||  |||||||||||| | |||| ||||||||    
T  31624085 taagctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatg 31624151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 9093639 - 9093574
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| |||||||| ||||||||||||||||||| | || || ||| || ||||||||||| ||||    
T  9093639 ttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaa 9093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 27924634 - 27924601
Alignment:
Q  89 aaataagctaaaaatagcttatggacgtgttata 122  Q
    |||||||||||||||| |||||||||||||||||    
T  27924634 aaataagctaaaaataacttatggacgtgttata 27924601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 28641824 - 28641747
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttata 122  Q
    |||||| ||| |||||||||  ||||||| || | | | ||||||||||||||||||| |||||||| || |||||||    
T  28641824 taagctataaactgttttcaatagctattctgcagagcttatgaaaataagctaaaaacagcttatgaacatgttata 28641747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 31671157 - 31671092
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||||||||| |||||||||||| ||| ||||  | |||| | |||||||||||||| ||||    
T  31671157 ttttcatataagctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaaaa 31671092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 2735062 - 2735130
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || |||||||||||||||||| || ||| | ||| |||||||||||||  |||| ||||||||    
T  2735062 tataatctataagctgttttcataagcaatcttgaacaacttatgaaaataagccgaaaacagcttatg 2735130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 3202024 - 3201956
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || |||||| | |||||||||||| ||||||||||||||  |||||||| |||| | ||||||    
T  3202024 tataaactataagctatgttcataagctatcttggataacatatgggaataagctgaaaacaacttatg 3201956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 4420652 - 4420735
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctctt 143  Q
    ||||| |||||||| ||||| | | |||| ||||||||| |||| |||||||| || ||| |||  |||||||||||||||||||    
T  4420652 ttttcctaagctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataa-tttgtttctataagctctt 4420735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 9109328 - 9109276
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||||| |||||||||||||| | ||| |||||| ||| ||||||||||||    
T  9109328 tataagctataagctgttttcattaactaatttggagaacctatgaaaataag 9109276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 9604842 - 9604878
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggat 79  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  9604842 tataagctataagctgttttcataagttattttggat 9604878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 24982698 - 24982762
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 107  Q
    |||| ||| ||||||||||||||||| ||||||||| ||| |||||   ||||||||||| ||||    
T  24982698 tatatgctataagctgttttcataagttattttggagaacttatgagggtaagctaaaaaaagct 24982762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 31813174 - 31813222
Alignment:
Q  63 cataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||| ||||| |||||||||||||||||| ||||  |||||||    
T  31813174 cataagctatcttggagaacatatgaaaataagctgaaaacggcttatg 31813222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 17822942 - 17822874
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| |||| |||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||    
T  17822942 tatatgctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatg 17822874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 42685417 - 42685476
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||||||||| |||||    
T  42685417 tataagctctaagttgttttcataagctattttggagaacgtgtgaaaataagccaaaaa 42685476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 942184 - 942129
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaa 99  Q
    ||||| |||||||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  942184 ataagttctaagctgttttcataagctattatggagaacttataaaaataagctaa 942129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 9841053 - 9841141
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct-aaaaatagcttatggacgtgttatatgtt 126  Q
    |||||||||||||| |||| ||||||||||||||||  |||  ||| | |||||||||||| ||||| ||||||||||| ||| |||||||    
T  9841053 ttttcatataagctataagatgttttcataagctatcctgg--aacttgtgaaaataagctgaaaaacagcttatggacatgtcatatgtt 9841141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 16200058 - 16199999
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||| ||| ||||||||||||||||||||| |||||  || |||||||||||||||||||    
T  16200058 tatatgctataagctgttttcataagctatcttggaggacttatgaaaataagctaaaaa 16199999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 20031736 - 20031810
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct-aaaaatagcttat 110  Q
    ||||||| |||||| ||||| |||||||||||||||||| || ||| ||||||||| |||| ||||| |||||||    
T  20031736 ttttcatgtaagctataagcagttttcataagctattttagagaacttatgaaaatgagctgaaaaacagcttat 20031810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 2996560 - 2996637
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||| ||||||| | |||| |||||||||||||||| ||||| | | |||||||||||| | |||| |||||||||||    
T  2996560 tttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggac 2996637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 55302251 - 55302308
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||||||| ||||||||||| ||||| ||| |||||||||||||| |||| ||||||    
T  55302251 taagctgttatcataagctatgttggaaaacttatgaaaataagctgaaaaaagctta 55302308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 825552 - 825508
Alignment:
Q  58 gttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||    
T  825552 gttttcataagctattttggagaacttatgaaaataagctgaaaa 825508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 24444025 - 24444068
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggata 80  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||    
T  24444025 ttttcatataagctataagttgttttcataagctattgtggata 24444068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 1706609 - 1706683
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || ||||| |||||||||||||||| |||| ||||| | | |||||||||||| |  ||||||||||||    
T  1706609 ttttcgtagaagctataagctgttttcataaactatcttggacagcttatgaaaataagttggaaatagcttatg 1706683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 27043913 - 27043835
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacg 115  Q
    ||||| |||||||| |||| |||||| |||| |||| ||||| ||| |||||| |||||||||||| |  |||||||||    
T  27043913 ttttcgtataagctataagatgtttttataaactatcttggagaacgtatgaatataagctaaaaacaatttatggacg 27043835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 35571714 - 35571656
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    ||||| |||||||| ||||||||||||||||||||| || || ||| | ||||||||||    
T  35571714 ttttcgtataagctataagctgttttcataagctatcttagagaacttgtgaaaataag 35571656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 52754586 - 52754624
Alignment:
Q  36 cttttcatataagctctaagctgttttcataagctattt 74  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  52754586 cttttcacataagctataagctgttttcataagctattt 52754624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 53315360 - 53315402
Alignment:
Q  84 tatgaaaataagctaaaaatagcttatggacgtgttatatgtt 126  Q
    |||||||||||| |||||||||||||||||| ||| |||||||    
T  53315360 tatgaaaataagttaaaaatagcttatggacatgtgatatgtt 53315402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 53626763 - 53626813
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatg 87  Q
    |||||||||||||| |||||||||||||||||| ||| |||| || |||||    
T  53626763 ttttcatataagctataagctgttttcataagcgattatggacaatatatg 53626813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 36048520 - 36048593
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||||| |||||| |||||| ||||||| || || | | |||| ||||||||| | ||||||||||    
T  36048520 ttttcatataagctataagctattttcaaaagctatcttagagagcttatggaaataagctgacaatagcttat 36048593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 40174550 - 40174627
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||| ||||| ||||||||||||||||||||  ||||| ||| | ||| |||||| | |||| || ||||||||    
T  40174550 ttttcataaaagctataagctgttttcataagctacattggagaacttgtgataataagttgaaaacagtttatggac 40174627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 51630098 - 51630163
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||| ||||||||| |||||| |||||||||||||| ||| | ||  |||||||||||||| ||||    
T  51630098 ttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaataagctgaaaa 51630163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 52315265 - 52315220
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    |||| ||||| |||||||||||||||| ||| ||||||||||||||    
T  52315265 taagttgtttccataagctattttggaaaacttatgaaaataagct 52315220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 11802528 - 11802596
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgg 112  Q
    |||||||  ||| ||||||||||||||||| |||| | | ||||| |||||||| |||| |||||||||    
T  11802528 ataagctacaagttgttttcataagctattatggagagcttatgagaataagctgaaaacagcttatgg 11802596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 29778782 - 29778842
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    |||||||||||||| |||| |||||||||||||||  ||| | | | ||||||||||||||    
T  29778782 ttttcatataagctgtaagttgttttcataagctaccttgaagagcttatgaaaataagct 29778842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 32421096 - 32421148
Alignment:
Q  41 catataagctctaagctgttttcataagctattttggataacatatgaaaata 93  Q
    |||||||||| ||||| |||| |||||||||||||| | ||| ||||||||||    
T  32421096 catataagctataagcagtttccataagctattttgaagaacttatgaaaata 32421148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 36460573 - 36460605
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagc 69  Q
    |||||||||||||| ||||||||||||||||||    
T  36460573 ttttcatataagctataagctgttttcataagc 36460605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 49202638 - 49202690
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||||| |||| ||||||| |||||||| |||||||||  |||||||||||    
T  49202638 tataagctataagttgttttcgtaagctatcttggataactaatgaaaataag 49202690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 33972797 - 33972729
Alignment:
Q  57 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgt 125  Q
    |||||| ||||||||||||||| ||| | |||||||||||| |||| || |||||||| ||||||||||    
T  33972797 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaaaggttatggacatgttatatgt 33972729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 44747485 - 44747418
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||| ||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||  |||||||    
T  44747485 tataggctataagctgttttcataagctatcttggaaaacttatgaaaataagctgaaagaagcttat 44747418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 50600254 - 50600191
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 107  Q
    ||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||| |||| ||||    
T  50600254 ataagctataagctgttttcatcagctatattggagaacttatgaaaataagctgaaaacagct 50600191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 466202 - 466252
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||| ||||||    
T  466202 ttttcataagctatgttggagaacttatgaaaataagctaaaaaaagctta 466252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 2719463 - 2719532
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||| ||| ||||||||||||||||| ||||| ||| |||||||||||||| | || | |||||||||    
T  2719463 taagctataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggac 2719532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 33405250 - 33405197
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaa 90  Q
    |||||||||||||| ||||||||||||||||||||| ||| | ||| |||||||    
T  33405250 ttttcatataagctataagctgttttcataagctatcttgaagaacttatgaaa 33405197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 21367669 - 21367725
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||||| |||| |||||    
T  21367669 taagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagctt 21367725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 34254891 - 34254815
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgga 113  Q
    |||| |||| |||| ||| || ||||||||||||||| |||| ||| |||| ||||||||| ||| |||||||||||    
T  34254891 tttttatattagctataaactattttcataagctattctggagaacttatgtaaataagctgaaagtagcttatgga 34254815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 2201115 - 2201158
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggata 80  Q
    |||||||||||||| |||||||||||||| |||||| |||||||    
T  2201115 ttttcatataagctataagctgttttcattagctatcttggata 2201158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 16790439 - 16790384
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| ||||||| | ||||||||||| || |||| |||||||||||    
T  16790439 ttttcataagctatcttggatagcttatgaaaataaactgaaaacagcttatggac 16790384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 2128326 - 2128256
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttata 122  Q
    |||||||||||||||||| || ||  | ||| |||||||||||||| |||| |||||||| || |||||||    
T  2128326 taagctgttttcataagccatcttttagaacgtatgaaaataagctgaaaacagcttatgaacatgttata 2128256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 5436246 - 5436304
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||||||||| | || ||||||||||||  |||| ||||| ||||||||||||||||    
T  5436246 ttttcatataagttgtatgctgttttcatagactatcttggagaacatatgaaaataag 5436304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 28622074 - 28622008
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||| |||||||||||||||| |||| || || ||| ||||||||||| || |||| ||||||||    
T  28622074 taagctataagctgttttcataaactatcttcgagaacttatgaaaataacctgaaaacagcttatg 28622008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 32582747 - 32582789
Alignment:
Q  53 aagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||||||||||||||||||||||| ||| |||| |||||||    
T  32582747 aagctgttttcataagctattttggagaacttatggaaataag 32582789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 36783417 - 36783343
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||| || | ||||||||||||||||||| |||||  |  |||||| ||||||| |||| ||||||||    
T  36783417 ttttcatataaactattagctgttttcataagctatattggagcaattatgaatataagctgaaaacagcttatg 36783343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 37273140 - 37273225
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 142  Q
    ||||||||||||||||| ||||| ||| |||| ||||||| | |||| | ||||||||| ||| ||| | ||||||| |||||||||    
T  37273140 ctgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataag-ttgtttccataagctct 37273225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 41633362 - 41633412
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||||||||| |||||||||||| | | |||||||||||||| ||||    
T  41633362 taagctgttttcatcagctattttggagagcttatgaaaataagctgaaaa 41633412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 52618990 - 52619064
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||| | ||||||||||||| ||||||| ||| | | | | |||||||||| | |||||||||||||    
T  52618990 ttttcatataagttataagctgttttcacaagctatcttgaagagcttgtgaaaataaggtgaaaatagcttatg 52619064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 14548804 - 14548739
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||||||||| |||| |||||||||||| |||| |||| | | |||| ||||||||| ||||    
T  14548804 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaa 14548739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 21865563 - 21865604
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttgga 78  Q
    |||||||||||||| |||| |||||| |||||||||||||||    
T  21865563 ttttcatataagctataagttgttttgataagctattttgga 21865604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 25183071 - 25182994
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct-aaaaatagcttatgga 113  Q
    ||||||||| |||| |||||||||||||||||||||  |||| ||  | || ||||| ||| ||||||||||||||||    
T  25183071 ttttcatatgagctataagctgttttcataagctatcatggaaaatttgtggaaatatgctgaaaaatagcttatgga 25182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 30443886 - 30443951
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||| ||| ||||||||||| |||| |||| ||||| ||| |||||||||||||| |||| |||||    
T  30443886 tatatgctataagctgtttttataaactatattggagaacttatgaaaataagctgaaaaaagctt 30443951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 901931 - 901987
Alignment:
Q  57 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgga 113  Q
    |||||| ||||||||| ||||| ||| |||||||||||| | |||| ||||||||||    
T  901931 tgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgga 901987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 14145899 - 14145959
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    ||||| |||| ||| |||| | |||||||||||||| |||||| || ||||||||||||||    
T  14145899 ttttcgtatatgctataagttattttcataagctatcttggattacttatgaaaataagct 14145959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 20880469 - 20880537
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| ||| ||||||| | ||||||| ||||| ||| |||||||||||||| |||| ||||||||    
T  20880469 tatatgctataaactgtttttaaaagctatattggagaacttatgaaaataagctcaaaaaagcttatg 20880537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 39602287 - 39602235
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||| | ||||||||||||||||||||| || || ||| ||||||||||||    
T  39602287 tataagttataagctgttttcataagctatctttgagaacttatgaaaataag 39602235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 45541580 - 45541632
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| ||||||||| ||||| ||||| || |||| ||||||||    
T  45541580 ttttcataagctatcttggataacttatgagaataacctgaaaacagcttatg 45541632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 22233 - 22290
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||||||| ||||||||||| ||||| ||| |||||||||||||| |||| ||||||    
T  22233 taagctgttatcataagctatgttggaaaacttatgaaaataagctgaaaaaagctta 22290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 21353 - 21304
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaa 101  Q
    ||||||||||||||||||||| ||||| ||  ||||||||||| ||||||    
T  21353 taagctgttttcataagctatattggagaaattatgaaaataaactaaaa 21304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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