View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1321_low_11 (Length: 312)
Name: NF1321_low_11
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1321_low_11 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 36734557 - 36734248
Alignment:
| Q |
1 |
ataagaagtttcatgtttcaagttcgccaattatattttaaaaacaaaatcaaaatacga------gtgcatataatgtaaatctgagtcacttgtcact |
94 |
Q |
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| T |
36734557 |
ataagaagtttcatgtttcaagttcgccaattatattttaaaaacaaaatcaaaatacgatctagagtgcatataatgtaaatctgagtcacttgtcact |
36734458 |
T |
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| Q |
95 |
taccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttga |
194 |
Q |
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| T |
36734457 |
taccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttga |
36734358 |
T |
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| Q |
195 |
ccttctcctccaccaacttcctttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtccctaatttccttta |
294 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36734357 |
ccttctcctccaccaacttcttttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtccctaatttcctcta |
36734258 |
T |
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| Q |
295 |
accctttgct |
304 |
Q |
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|||||||||| |
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| T |
36734257 |
accctttgct |
36734248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 24649 - 24587
Alignment:
| Q |
127 |
tcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaa |
189 |
Q |
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| T |
24649 |
tcaattttatttcactgctctcatcttcatgaatttccaacaaaatatcaagcaaatccttaa |
24587 |
T |
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