View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1321_low_13 (Length: 300)
Name: NF1321_low_13
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1321_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 27 - 289
Target Start/End: Complemental strand, 32409326 - 32409062
Alignment:
| Q |
27 |
gattgaattatatttacacttgtagattcaaatgtgtgcacgcagactcataaagacacagatgtaaatcatatcatagtactattgttagactatact- |
125 |
Q |
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| T |
32409326 |
gattgaattatatttacacttatagattcaaatgtgtgcatgcagactcataaagacacagatgtaaatcatatcatagtactattgttagactatacca |
32409227 |
T |
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| Q |
126 |
-tatatttgtatttggatctattatttcttgtggcttctagtattctcaactttccacaaggacaaatcagcatcaggtacctacctctattcccatgtg |
224 |
Q |
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| T |
32409226 |
gtatatttgtatttggatctattatttcttgtggcttctagtattctcaactttccacaaggacaaatcagcatcaggtacctacctctattcacatgtg |
32409127 |
T |
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| Q |
225 |
tgctcataaatcattacaacaaaacaatgtcctacatacatataccctgctcctaccttgtctct |
289 |
Q |
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| T |
32409126 |
tgctcataaatcattacaacaaaacaatgtcctacatacatataccctgctcctaccttgtctct |
32409062 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 36163198 - 36163279
Alignment:
| Q |
202 |
gtacctacctctattcccatgtgtgctcataaatcattacaacaaaacaatgtcctacatacatataccctgctcctacctt |
283 |
Q |
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| T |
36163198 |
gtacccacctatattcacatgtgtgcccattaatcatcacaacaaaacaatatcctccatacacatatactgctcctacctt |
36163279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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