View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1321_low_18 (Length: 276)
Name: NF1321_low_18
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1321_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 26648022 - 26647831
Alignment:
| Q |
33 |
atcatcatttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaattatattcagtcttgtgaatatcaccctctttcattcg |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26648022 |
atcatcatttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa----attcagtcttgtgaatatcaccctctttcattcg |
26647927 |
T |
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| Q |
133 |
aatctgatgataccctgatttcagcatactctccctcaggttgagttcgaaatgccaaataattgacacaaacaatagtagcaaaaagatataaca |
228 |
Q |
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| T |
26647926 |
aatctgatgataccctgatttcagcatactctccctcaggttgagctcgaaatgccaaataattgacacaaacaatagtagcaaaaagatataaca |
26647831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 13687083 - 13687139
Alignment:
| Q |
38 |
catttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13687083 |
catttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa |
13687139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 13689035 - 13689091
Alignment:
| Q |
38 |
catttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa |
94 |
Q |
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| T |
13689035 |
catttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa |
13689091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 22188703 - 22188653
Alignment:
| Q |
39 |
atttgttaacccaaagggcattacgagatattcataatggccttcatgagt |
89 |
Q |
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| T |
22188703 |
atttgttaacacaaagggcattacgagatattcataacggccttcatgagt |
22188653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 37004144 - 37004049
Alignment:
| Q |
56 |
gcattacgagatattcataatggccttcatgagttcaaattatattcagtcttgtgaatatcaccctctttcattcgaatctgatgataccctgatttca |
155 |
Q |
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||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |
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| T |
37004144 |
gcattacgagatattcagaatgtccttcatgagttcaaa----attcagtcttgtgaatatcaccctctttcgtttgaatctgatgataccctaatttca |
37004049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 36993859 - 36993754
Alignment:
| Q |
46 |
aacccaaagggcattacgagatattcataatggccttcatgagttcaaattatattcagtcttgtgaatatcaccctctttcattcgaatctgatgatac |
145 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||| ||| |||||||||| ||| || |
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| T |
36993859 |
aacccaaagggcattttgagatattcataatggccttcatgagttcaaat----ttcagttttttgaatatcaccctccttcgttcgaatctggtgacac |
36993764 |
T |
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| Q |
146 |
cctgatttca |
155 |
Q |
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|||||||||| |
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| T |
36993763 |
cctgatttca |
36993754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 36993343 - 36993269
Alignment:
| Q |
153 |
tcagcatactctccctcaggttgagttcgaaatgccaaataattgacacaaacaatagtagcaaaaagatataaca |
228 |
Q |
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||||||||||||||| ||||||||| || |||| | |||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
36993343 |
tcagcatactctccc-caggttgagctctaaatactaaataattgacacaaataatagtaacaaaaggatataaca |
36993269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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