View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1321_low_20 (Length: 268)
Name: NF1321_low_20
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1321_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 42898671 - 42898501
Alignment:
| Q |
32 |
gagaggcattccgcacaaataataaacaaagtatggggatgacggtttcccttgtcgtaagcctctttcaggatatcataaaccaatacccttcccattt |
131 |
Q |
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| T |
42898671 |
gagaggccttccgcacaaataataaacaaagtatggggacgacggtttcccttgtcgtatgtctctttcaggatatcgtaaaccaatacccttcccattt |
42898572 |
T |
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| Q |
132 |
tcacccatttctcgtcgaaatccatcttcctcatcatacattggacaaaactatagtttactcaataatat |
202 |
Q |
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| T |
42898571 |
tcacccatttctcgtcaaaatccatcttcctcatcatacattggacaaaactccagtttactcaatcatat |
42898501 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 22409049 - 22409098
Alignment:
| Q |
130 |
tttcacccatttctcgtcgaaatccatcttcctcatcatacattggacaa |
179 |
Q |
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| T |
22409049 |
tttcacccatttctcgtcgaaccccatcttcctcatcatacctcggacaa |
22409098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 15163044 - 15163084
Alignment:
| Q |
81 |
ccttgtcgtaagcctctttcaggatatcataaaccaatacc |
121 |
Q |
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| T |
15163044 |
ccttgtcgtaagcctcttccaggatcttataaaccaatacc |
15163084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 14343500 - 14343448
Alignment:
| Q |
130 |
tttcacccatttctcgtcgaaatccatcttcctcatcatacattggacaaaac |
182 |
Q |
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| T |
14343500 |
tttcacccacttctcatcgaaccccatcttcctcatcataccttgaacaaaac |
14343448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 40732317 - 40732369
Alignment:
| Q |
138 |
atttctcgtcgaaatccatcttcctcatcatacattggacaaaactatagttt |
190 |
Q |
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| T |
40732317 |
atttctcatcaaactccatctttctcatcataccttggacaaaactctagttt |
40732369 |
T |
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